Table 3.

List of the JCV types used in the phylogenetic analysisa

GenotypeStrain no.GenBank accession no.Reference
Type 1 (Europe)
 1AMad-1JO227 17
 1A124AFO15526 3
 1B123AFO15227 4
Type 2 (Asia)
 2ATokyo-1AFO30085 4
 2A224AFO15529 4
 2A225AFO15530 4
 2A226AFO15531 4
 2B223AFO15532 4
 2B227AFO15533 4
 2C228AFO15534 4
 2C229AFO15535 4
 2D230AFO15536 4
Type 3 (Africa)
 3A308 U73500 1
 3A312 U73502 1
 3B311 U73501 1
Type 4 (European and African American)402AFO15528 2
Type 5 (minor European)501AFO15684 4
Type 6 (West Africa)601AFO15537Unpublished data
Type 7 (Southeast Asia)Tai-3 U61771 28
  • a From the work of Jobes et al. (20).