Table 4.

GenBank clones that include the sequence region from position 21 to position 958 and match group I or group II probes

Clone or organismOTUOriginReference
SBAR5 I-OA a Marine plankton, surface 8
SBAR12I-AAMarine plankton, surface 8
SBAR1AII-EEMarine plankton, surface 8
SBAR16 II-KA Marine plankton, surface 8
WHARQ I-CA Marine plankton, surface 8
WHARN II-CL Marine plankton, surface 8
OARBII-BBMarine plankton, surface 9
ANT12I-AAMarine plankton, surface 9
ANT5 II-CL Marine plankton, surface 9
FB7I-BBMarine plankton, 200 m 4
Cenarchaeum symbiosum I-PB Sponge endosymbiont 41
PVA-OTU2I-CDHydrothermal vent, 1,000 m 31
PVA-OTU3I-EDHydrothermal vent, 1,000 m 31
PVA-OTU4I-CDHydrothermal vent, 1,000 m 31
PVA-OTU1II-FHHydrothermal vent, 1,000 m 31
LMA137 I-AF Freshwater sediment, 100 m 24
LMA226 I-JD Freshwater sediment, 100 m 24
LMA229 I-AD Freshwater sediment, 100 m 24
LMA238 I-AF Freshwater sediment, 100 m 24
FF619II-EHMarine fish digestive tract 47
FF620II-EHMarine fish digestive tract 47
FIN625II-FHMarine fish digestive tract 47
TS10C286I-CDMarine particles 47
TS10C299I-CDMarine particles 47
TS235C306I-CDMarine particles 47
TS235C310 I-AI Marine particles 47
TS10C294II-FHMarine particles 47
TS10C298II-EHMarine particles 47
TS235C302II-EDMarine particles 47
JTA47I-AAMarine sediments, 6,400 mb
JTA266 I-SA Marine sediments, 6,400 m— 
JTB153 I-RA Marine sediments, 6,400 m— 
JTB167 I-EA Marine sediments, 6,400 m— 
JTB168 I-CA Marine sediments, 6,400 m— 
Mar-Ar-1 I-TD Marine sediments, 11,000 m 23
Mar-Ar-11 I-TD Marine sediments, 11,000 m 23
Mar-Ar-15 I-RA Marine sediments, 11,000 m 23
C6I-AAMarine plankton, 500 m— 
C20 I-AG Marine plankton, 500 m— 
C33 I-CA Marine plankton, 500 m— 
C46I-AAMarine plankton, 500 m— 
C48I-AAMarine plankton, 500 m— 
PM7 I-QB Marine plankton, 500 m— 
PM8 I-QH Marine plankton, 500 m— 
  • a Boldface type indicates an OTU that was not represented in our libraries.

  • b —, data obtained from GenBank (unpublished data).