Table 4.

Percentages of amino acid identity between the current deep-sea RuBisCO form I OTUs and the nearest neighbor species from the database

OTU% Identity with OTU:
2345678910111213141516171819202122232425262728293031323334353637383940
1 TAG-Chm(I)-1 78 68 71 77 64 69 6575 74 7476 66 63 77 75 76 7578 77 71 71 78 80 74 72 76 7172 69 78 71 80 81 78 81 69 5428 37
2 TAG-Chm(I)-2 69 70 70 66 7070 78 77 81 78 69 66 81 80 7271 81 72 69 72 73 83 75 71 7569 74 71 84 73 83 75 76 76 6953 32 36
3 TAG-Chm(I)-3 83 72 6570 68 64 64 64 64 69 66 66 6573 74 69 72 68 81 69 68 74 7466 67 66 71 68 69 69 73 72 7486 54 30 36
4 TAG-Chm(I)-4 7267 72 69 65 65 65 64 69 68 6665 72 73 72 72 68 81 71 71 7273 71 66 67 74 68 68 72 74 7273 84 58 34 39
5 TAG-Chm(I)-566 72 71 70 69 69 69 6966 71 71 89 88 75 90 80 72 7773 74 75 74 80 72 72 72 71 7488 84 86 73 53 31 37
6 MOT-Hvw(I)-182 77 63 63 64 63 8093 65 63 67 68 66 66 63 62 6567 72 67 66 60 62 84 65 68 6868 68 69 66 51 27 36
7 MOT-Hvw(I)-285 69 69 67 69 8982 71 70 72 71 72 71 66 67 7173 74 69 72 66 66 89 69 70 7474 72 74 69 54 31 39
8 MOT-Hvw(I)-365 65 65 66 87 7667 67 71 72 70 71 67 65 68 7172 66 68 65 65 84 67 69 71 7169 70 66 54 31 36
9 MOT-Hvw(I)-495 89 94 66 6295 95 71 71 79 70 66 68 71 7872 66 74 66 68 68 90 69 80 7475 75 66 56 31 36
10 MOT-Hvw(I)-587 92 66 62 9493 71 71 77 70 64 67 69 77 7266 73 65 67 69 88 69 78 73 7374 66 56 31 36
11 MOT-Hvw(I)-686 65 63 8787 71 71 77 70 66 68 68 79 7168 74 66 68 66 94 68 79 74 7576 66 54 31 36
12 MOT-Hvw(I)-766 63 95 9571 70 79 69 66 66 71 78 73 6774 66 68 69 88 70 80 74 74 7566 56 30 36
13 MOT-Hvw(I)-879 68 6869 68 74 69 65 64 68 74 72 6969 65 64 86 67 69 74 69 69 7166 51 31 36
14 MOT-Hvw(I)-964 6367 67 66 66 62 62 65 68 73 6765 61 61 83 65 69 68 68 67 6866 52 29 36
15 MOT-Hvw(I)-1096 7272 81 71 66 69 73 80 75 69 7568 69 71 90 72 82 76 76 77 6857 31 37
16 MOT-Hvw(I)-117271 80 71 66 68 72 80 74 68 7567 69 69 89 71 81 75 75 76 6756 31 36
17 MOT-Hvw(I)-129676 93 81 75 77 75 80 77 76 8375 73 74 77 76 89 88 88 77 5431 39
18 MOT-Sym(I)-17593 83 75 77 74 80 78 75 83 7574 73 76 75 89 89 88 78 55 3039
19 ST-Sed(I)-17770 71 74 94 75 72 80 71 74 7581 73 95 78 77 78 72 60 32 37
20 ST-Sed(I)-28774 78 75 79 76 77 86 75 74 7276 77 89 88 87 76 54 30 37
21 ST-Sed(I)-36976 70 72 72 71 81 71 69 68 6971 82 84 81 71 52 28 35
22 ST-Sed(I)-46870 74 74 68 69 68 68 71 71 7176 74 77 83 54 29 39
23 ST-Sed(I)-57474 75 75 76 71 72 71 69 74 8481 83 68 54 32 36
24 JT-Sed(I)-17471 80 71 73 74 83 72 96 77 7777 71 59 33 37
25 JT-Sed(I)-28374 72 72 77 74 90 75 83 80 8376 54 24 33
26 NOR-Sed(I)-17273 71 71 71 77 72 81 79 80 7553 25 33
27 NOR-Sed(I)-27279 72 78 72 83 80 79 81 69 5428 37
28 NOR-Sed(I)-37368 69 70 71 83 83 83 69 49 2834
29 NOR-Sed(I)-46772 72 75 77 78 77 68 48 27 34
30 Chlamydomonas reinhardtii 6972 75 74 73 74 72 56 31 39
31Synechococcus sp. strain WH78037283 77 77 79 69 57 30 37
32Hydrogenovibrio marinus cbbL-17478 74 77 72 54 25 34
33Hydrogenovibrio marinus cbbL-27777 78 72 59 33 38
34 Thiobacillus ferrooxidans cbbL-29096 78 57 31 38
35 Alvinoconcha hessleri symbiont9075 54 32 38
36 Thiobacillus denitrificans 7756 31 39
37 Pseudomonas hydrogenothermophila 5931 40
38 Alcaligenes eutrophusa 3236
39 Rhodospirillum rubruma 26
40 Methanococcus jannaschiia
  • a The species A. eutrophus, R. rubrum, and M. jannaschii, carrying form I red-like, form II, and archaeal RuBisCO, respectively, were used as out groups.