Table 1.

Probes used in this study

ProbeSpecificitySequence (5′-3′)Name (OPD nomenclature)aReference
Univ1390UniversalGACGGGCGGTGTGTACAAS--Univ-1390-a-A-1825
Eub338DomainBacteria GCTGCCTCCCGTAGGAGTS-D-Bact-0338-a-A-182
Erec482 C. coccoides-Eubacterium rectalegroupGCTTCTTAGTCA(A/G)GTACCGS--Erec-0482-a-A-1912
Clept1240 C. leptumgroupGTTTT(A/G)TCAACGGCAGTCS-G-Clept-1240-a-A-1822
Bacto1080 BacteroidesclusterGCACTTAAGCCGACACCTS--Bacto-1080-a-A-188
Bif228 Bifidobacterium GATAGGACGCGACCCCATS-G-Bif-228-a-A-18I. Mangin, Y. Bouhnik, A. Suan, V. Rochet, L. Raskine, P. Crenn, and J. Doŕe, unpublished data
E.coli1513 E. coli CACCGTAGTGCCTCGTCATCA20
Lab158 Lactobacillus-Enterococcus GGTATTAGCA(C/T)CTGTTTCCAS-G-Lab-0158-a-A-2014
  • a Probe names are in accordance with the Oligonucleotide Probe Database (OPD) (1).