TABLE 3.

DGGE band DNA sequences

Band no.Accession no.OriginDate of sequence collection(s)Phylum or classCategoryClosest matchSourceAccession no.% Simi- larity
21 AY308684 MarineJuly, Sept.AlphaSAR11a C. P. ubique b Coastal Pacific Ocean AF510192 100
30 AY308694 MarineSept., Apr.AlphaRoseobacteraNAC11-3Atlantic Ocean AF245632 100
42 AY308706 MarineApr.AlphaRoseobacterShippaganLarval haddock culture AF100168 100
49 AY308716 MarineApr.AlphaRoseobacterIsolate ARK10207Arctic sea ice/water AF468373 100
44a AY308708 MarineApr.AlphaRoseobacterZD0207North Sea AJ400341 100
44b AY308709 MarineApr.AlphaRoseobacterZD0207North Sea AJ400341 99
18 AY308681 MarineJulyGammaSAR86aEBAC31A08Coastal Pacific Ocean AF279106 99
19 AY308682 MarineJulyBacteroidetescUnknownIsolate HOS19 Halichondria panicea Z88577 100
20 AY308683 MarineJulyBacteroidetesUnknownFL-16Coastal Pacific Ocean AY028182 100
45 AY308710 MarineApr.BacteroidetesUnknownSS1Japan Sea AB035018 97
46 AY308711 MarineApr.BacteroidetesUnknownCRE-FL57Columbia River estuary AF141474 100
47a AY308712 MarineApr.BacteroidetesFlavobacterialesGOBB3-CL102Baltic Sea AF388899 100
47b AY308713 MarineApr.BacteroidetesFlavobacterialesGOBB3-CL102Baltic Sea AF388899 99
48a AY308714 MarineApr.BacteroidetesUnknownOTU_ANorth Sea AF207850 100
48b AY308715 MarineApr.BacteroidetesUnknownMoDE-8Coastal Pacific Ocean AF419358 100
38 AY308702 MarineApr.PlastidCoscinodiscophyceaeCRE-PA60Columbia River estuary AF141534 99
40 AY308704 MarineApr.PlastidHaptophyceaePlastid Ochrosphaera neapolitan X80390 100
17 AY308680 EstuarineJulyActinobacteriaUnknownCL-S77-289Salt marsh AF547402 98
28 AY308692 EstuarineSept.AlphaRoseobacter R. gallaeciensis d Marine Y13244 98
29 AY308693 EstuarineSept.AlphaRickettsialesCRO-FL16Coastal Pacific Ocean AF141594 99
25 AY308689 EstuarineSept.BetaUnknownMul01-10Freshwater sediments AJ518107 100
16 AY308679 EstuarineJulyGammaUnknownIsolate ODIII6Marine hydrothermal vent AF170422 96
31 AY308695 EstuarineSept.GammaUnknownIsolate ODIII6Marine hydrothermal vent AF170422 99
43 AY308707 EstuarineApr.GammaUnknownOM182Coastal Atlantic Ocean U70699 96
14 AY308677 EstuarineJuly, Sept.BacteroidetesUnknownOM271Coastal Atlantic Ocean U70708 100
12a AY308673 EstuarineJuly, Sept.BacteroidetesUnknownFL-16Coastal Pacific Ocean AY028182 99
12b AY308674 EstuarineJuly, Sept.BacteroidetesUnknownFL-16Coastal Pacific Ocean AY028182 98
11a AY308670 EstuarineJulyCyanobacteriaSynechococcusNAC1-5Atlantic Ocean AF245618 100
11b AY308671 EstuarineJulyCyanobacteriaSynechococcusNAC1-5Atlantic Ocean AF245618 99
11c AY308672 EstuarineJulyCyanobacteriaSynechococcusNAC1-5Atlantic Ocean AF245618 99
9 AY308668 EstuarineJuly, Sept.PlastidUnknownPlastid Chilomonas paramecium AF545624 96
10 AY308669 EstuarineJuly, Sept.PlastidCoscinodiscophyceaeCRE-PA60Columbia River estuary AF141534 99
15 AY308678 EstuarineJulyPlastidPrasinophyceaePlastid EBAC38Coastal Pacific Ocean AF268228 99
26 AY308690 EstuarineSept.PlastidCoscinodiscophyceaePlastid MoDE-3Coastal Pacific Ocean AF419353 99
27 AY308691 EstuarineSept.PlastidCoscinodiscophyceaePlastid MoDE-3Coastal Pacific Ocean AF419353 98
36 AY308700 EstuarineApr.PlastidCoscinodiscophyceaeHstpL29 H. stipulacea leavese AF159634 100
8 AY308667 FreshwaterJuly, Sept.ActinobacteriaACK-MIfTLM6Toolik Lake AF534430 100
1 AY308659 FreshwaterJulyBetaIsolate BAL47fTLM4Toolik Lake AF534428 96
22 AY308685 FreshwaterSept.BetaIsolate BAL47TLM4Toolik Lake AF534428 99
32 AY308696 FreshwaterApr.BetaIsolate BAL47TLM4Toolik Lake AF534428 100
5b AY308664 FreshwaterApr.BetaUnknownOM180Coastal Atlantic Ocean U70707 100
3 AY308661 FreshwaterJulyDeltaBdellovibrioHC-20Arsenite-oxidizing biofilm AY168736 99
4 AY308662 FreshwaterJulyBacteroidetesUnknownCL0-55Crater Lake AF316796 94
23 AY308686 FreshwaterSept.BacteroidetesUnknownClone M09Wasterwater sludge AF495416 97
33 AY308697 FreshwaterApr.BacteroidetesFlavobacteriales F. gelidilacus g Ace Lake microbial mat AJ440996 98
34 AY308698 FreshwaterApr.BacteroidetesUnknownWL5-12Freshwater Weser estuary AF497890 95
35 AY308699 FreshwaterApr.BacteroidetesFlavobacterialesDGGE band7-3ChangJiang River AY071888 99
37 AY308701 FreshwaterApr.BacteroidetesFlavobacterialesDGGE band7-3ChangJiang River AY071888 98
39 AY308703 FreshwaterApr.BacteroidetesUnknownAEGEAN_179North Aegean Sea AF406541 98
41 AY308705 FreshwaterApr.BacteroidetesUnknnownCOL-28Marine mesocosm AY028189 93
5a AY308663 FreshwaterJuly, Sept., Apr.BacteroidetesPRD01a001BfCRE-FL39Columbia River estuary AF141460 100
7 AY308666 FreshwaterJulyBacteroidetesPRD01a001BCRE-FL39Columbia River estuary AF141460 99
2 AY308660 FreshwaterJulyPlastidCryptophytaLCK-26Lake Cadagno AF107323 100
6 AY308665 FreshwaterJulyPlastidChrysophyceaeTLMdgge17Toolik Lake AF534453 99
24a AY308687 FreshwaterSept.PlastidCryptophytaPlastid Hemiselmis virescens AB073112 100
24b AY308688 FreshwaterSept.PlastidCryptophytaPlastid Hemiselmis virescens AB073112 99
13a AY308675 UnknownSept., Apr.BetaIsolate BAL47CRE-FL19Columbia River estuary AF141446 100
13b AY308676 UnknownJuly, Sept., Apr.BacteroidetesFlavobacterialesOTU_CNorth Sea AF207852 100
  • a Reference 11.

  • b Candidatus Pelagibacter ubique.

  • c Also known as Cytophaga-Flavobacteria-Bacteroides group.

  • d Roseobacter gallaeciensis.

  • e Halophila stipulacea.

  • f From Zwart et al. (47).

  • g Flavobacterium gelidilacus.