TABLE 2.

atpD-amino acid and nucleotide signatures of Bifidobacterium and Lactobacillus taxa

TaxonPosition(s)aatpD amino acid signaturebatpD nucleotideb signature
Bifidobacterium38IATT
Bifidobacterium41-42KKAAGAAG
Bifidobacterium58-59NPAACCCG
Bifidobacterium84QCAG
Bifidobacterium106-107QRCAGCGA
Bifidobacterium137-138IGATCGGC
Bifidobacterium158QCAG
Bifidobacterium167PCCG
Bifidobacterium182NAAT
Bifidobacterium304NAAC
Bifidobacterium308AGCG
Bifidobacterium344QCAG
Bifidobacterium347GGGC
Bifidobacterium351YTAC
Bifidobacterium355KAAG
B. lactis (B. animalis)12I (V)ATC (GTC)
B. lactis (B. animalis)49V (E)GTG (GAG)
B. lactis (B. animalis)286A (S)GCC (TCC)
B. lactis (B. animalis)337T (I)ACA (ATA)
L. johnsonii (L. gasseri)17G (A)GGT (GCT)
L. johnsonii (L. gasseri)163-164GK (AT)GGTAAG (GCCACC)
L. johnsonii (L. gasseri)252T (P)ACA (CCA)
L. johnsonii (L. gasseri)254-255LS (PA)CTTTCA (CCAGCA)
L. johnsonii (L. gasseri)305K (Q)AAG (CAA)
L. johnsonii (L. gasseri)359I (L)ATT (CTT)
  • a Position in the amino acid sequence.

  • b The residues in parentheses are the residues in the species in parentheses.