TABLE 3.

Localization and predicted function of ORFs in the genomic region of strain MC1 containing rdpA and sdpA

ORFCoordinates (bp)Coding strandaFunction of closest matchSource microorganism% Amino acid identitybNo. of amino acids MC1/matchcAccession no.
1574-966dCarboxymuconolactone decarboxylase family protein Shewanella oneidensis MR-165 (81/124)130/128AAN53170.1
21006-2799cGlutathione-regulated potassium-proton antiporter Pseudomonas putida KT244069 (385/556)597/581AEO16523.1
33018-3494dPutative bacterioferritin Delftia acidovorans 70 (112/158)158/158CAC83620.1
43701-4642cHypothetical protein, similar to LysR-type regulators Ralstonia metallidurans 51 (161/314)313/360ZP 00022545.1
54745-6438dPutative dihydroxy acid dehydratase Ralstonia solanacearum 76 (420/555)564/557CAD16119.1
67981-9528dPutative transposase, similar to IS801 transposase Pseudomonas sp. strain ADP99 (512/515)515/515AAK50272.1
79836-10714d2,4-D dioxygenase (TfdA) Ralstonia eutropha JMP13437 (92/249)292/287A27082
812107-12541cMercury resistance regulatory protein (MerR) Enterobacter aerogenes 97 (140/144)144/144CAA83896.1
912613-12963dMercury uptake protein (MerT) Alcaligenes sp.96 (112/116)116/116CAA70196.1
1012977-13251dMercury uptake protein (MerP) Alcaligenes sp.94 (86/91)91/91CAA70197.1
1113279-13701dMercury uptake protein (MerC) Nitrosomonas europaea ATCC 1971886 (121/140)140/140CAD84751.1
1213741-15426dMercury ion reductase (MerA) Klebsiella pneumoniae 88 (494/561)561/561AAM44226.1
1315444-15809dMercury resistance secondary regulatory protein (MerD) Pseudomonas sp. strain ADP95 (115/121)121/121AAK50284.1
1415806-16042dPutative protein (MerE) Pseudomonas sp. strain ADP91 (71/78)78/78AAK50283.1
1516093-17028dPutative protein, similar to Urf2M Ralstonia metallidurans 88 (274/310)311/329CAD97548.1
1617245-17718dResolvase (TnpR) Nitrosomonas europaea ATCC 1971898 (154/157)158/186CAD84747.1
1717721-20690dTn3 family transposase (TnpA) Nitrosomonas europaea ATCC 1971895 (945/989)989/989CAD84746.1
1821024-22571dPutative transposase, similar to IS801 transposase Pseudomonas sp. strain ADP99 (511/515)515/515AAK50727.1
1922752-24137cPutative aromatic compound MFS transporter Pseudomonas putida KT244073 (318/433)461/450AAN69258.1
2024330-25217dTaurine dioxygenase (TauD) Pseudomonas aeruginosa PA0135 (100/284)295/279NP_252624
  • a c, complementary strand; d, direct strand.

  • b Values in parentheses refer to numbers of identical amino acids over the total number examined.

  • c Number of amino acids in strain MC1 ORF/number in the closest match.