TABLE 1.

Overview of the bacterial species identified based on either the occurrence of a dominant band in the DGGE pattern or on plating

Band or isolateAccession no.Highest homology (accession no.)% SimilarityNo. of identical base pairsTaxon
Bands
    2AY483162Eubacterium aggregans (AF073898)96114/118aFirmicutes
    3AY483163Lactococcus lactis subsp. lactis (AF515226)100160/160Firmicutes
    4AY483164Pseudomonas sp. strain ARDRA PSI (AY364085)99129/130Gammaproteobacteria
    5AY483165Enterococcus gallinarum CECT9707T (AJ420805)100153/153Firmicutes
    6AY483166Alcaligenes sp. strain 2-6 (AY296717)100158/158Betaproteobacteria
    7AY483167Uncultured bacterium clone up. 2 (AY212541)9597/102Bacteria
    8AY483168Swine manure pit bacterium PPC89 (AF445290)9869/70Bacteria
    9AY483169Uncultured earthworm intestine bacterium (AY154530)97144/147Bacteria
    11AY483170Lactobacillus casei YDT21 (AF375931)94145/153Firmicutes
    12AY483171Clostridium sp. strain MDA2315 (AY238334)100127/127Firmicutes
    13AY483172Uncultured Enterococcus sp. clone T8-20 (AF526922)100158/158Firmicutes
Isolates
    KRP1AY483173Pseudomonas aeruginosa ATCC 27853 (AY268175)95189/197Gammaproteobacteria
    KRP3AY483173Pseudomonas aeruginosa ATCC 27853 (AY268175)95189/197Gammaproteobacteria
    KRP4AY483174Bacillus sp. strain A24 (AF397399)100693/693Firmicutes
    KRA1AY483175Alcaligenes faecalis (AF155147)98696/704Betaproteobacteria
    KRA3AY489118Enterococcus sp. strain CDC PNS-E2 (AY321376)991,101/1,102Firmicutes
    KRA4AY489119Bacillus cereus ATCC14579 (AF290547)1001,101/1,101Firmicutes
    KRA5AY489119Bacillus cereus ATCC14579 (AF290547)1001,059/1,059Firmicutes
    KRAN1AY489118Enterococcus sp. strain CDC PNS-E2 (AY321376)991,101/1,102Firmicutes
    KRAN2AY483175Alcaligenes faecalis (AF155147)98696/704Betaproteobacteria
    KRAN3AY489118Enterococcus sp. strain CDC PNS-E2 (AY321376)991,101/1,102Firmicutes
    KRISO1AY483176Ochrobactrum sp. strain LMG 20570 (AY040351)98664/673Alphaproteobacteria
  • a Number of identical base pairs/number of base pairs examined.