TABLE 2.

Overview of 16S rRNA gene sequence types from a clone library of North Sea surface water and from libraries of sorted cells after hybridization with probes EUB338, BET42a, and CF319a

Accession no.Closest relative in GenBank database (accession no.)% SimilarityPhylogenetic affiliationLibrary(ies)a
AJ630664-AJ630667Pelagibacter ubique (AF510191)98-99SAR11 cluster, α-proteobacteriaa,b,c,d
AJ630668-AJ630670Clone OM188 (U70687)98-99a,b,c
AJ630671Clone OM155 (U70686)96b
AJ630672, AJ630673Clone MB11B07 (AY033299)99a,b
AJ630674-AJ630676Clone MB11F01 (AY033309)98-99b,c,d
AJ630677Clone Arctic 97A-7 (AF353236)97b
AJ630678Clone OM143 (U70685)99Rhodobacteriales, α-proteobacteriaa
AJ630679Roseobacter sp. strain SKA44 (AF261065)95a
AJ630680Roseobacter sp. strain NAC1-19 (AF245628)99a
AJ630681Roseobacter sp. strain NAC11-7 (AF245635)99c
AJ630682, AJ630683Maricaulis salignorans (AJ227806)88-89a,c
AJ630684, AJ630685Clone OCS126 (AF001638)92-99SAR116, α-proteobacteriaa,b
AJ704979, AJ704980, AJ630748Clone OM43 (U70704)99Methylophilales, β-proteobacteriaa,b,c
AJ704981, AJ704982Burkholderia kurkuriensis (AB024310)92Burkholderiales, β-proteobacteriaa,b
AJ704983Variovorax sp. strain WDL1 (AF538929)97c
AJ704984, AJ630749, AJ704985Nitrosospira sp. strain Nsp57 (AY123791)93-97Nitrosomonadales, β-proteobacteriab,c,d
AJ630686Pseudoalteromonas sp. strain ANT6 (AF025576)99Alteromonadales, γ-proteobacteriaa
AJ630687-AJ630689Pseudoalteromonas sp. strain SUR560 (AB038036)98-99a,c,d
AJ630690, AJ630691Pseudoalteromonas sp. strain KMM3562 (AY387858)97-99a,d
AJ630692, AJ630693Marinobacter sp. strain 2sq31 (AJ429499)92-98a,b
AJ630694Marinobacter sp. (AJ567576)90b
AJ630695Colwellia sp. (AF424148)98c
AJ630696Shewanella algae (X81622)91c
AJ630697Moraxella osloensis (AF005190)99Pseudomonadales, γ-proteobacteriac
AJ630698Oleispira antarctica (AJ426420)96Oceanospirillales, γ-proteobacteriaa
AJ630699Marinomonas protea (AJ238597)98a
AJ630700Oleiphilus messinensis (AJ295154)96a
AJ630701Halomonas sp. strain mp1 (HSP551115)89b
AJ630702, AJ630703Clone OCS5 (AF173975)97-99SAR86, γ-proteobacteriaa,b
AJ630704, AJ630705Clone OCS44 (AF001650)98-99a,b
AJ630706, AJ630707Clone MB12G02 (AY033328)98-99b,d
AJ630708-AJ630710Clone HTCC2188 (AY386344)93-98OM182 clade, γ-proteobacteriaa,b,c
AJ630711Clone HTCC2121 (AY386341)99SAR92 clade, γ-proteobacteriac
AJ630712, AJ630713Cycloclasticus spirillensus (AY026915)93-97Thiotrichales, γ-proteobacteriaa,c
AJ630714Dechloromarinus chlorophilus (AF170359)90γ-Proteobacteriaa
AJ630715Clone PLY-P3_21 (AY354852)97γ-Proteobacteriac
AJ630716, AJ630717Clone Arctic97A-13 (AF354618)98Sphingobacteriales, CFB groupc,d
AJ630718, AJ630719Clone MB11E04 (AY033305)98-99c,d
AJ630720Clone OM273 (U70709)89d
AJ630721Uncultured Polaribacter sp. (AF354621)96Flavobacteriales, CFB groupd
AJ630722, AJ630723Gelidibacter sp. (AF513398)89-97a,d
AJ630724Flavobacterium sp. (U85888)97d
AJ630725Flavobacterium frigridarium (AF162266)99d
AJ630726, AJ630727Crocinitomix catalasitica (AB078042)91-95b,d
AJ630728Clone BY71 (AJ298380)95Bacteroidetes, CFB groupc
AJ630729-AJ630731Clone PLY-P2-42 (AY354738)98-99a,c,d
AJ630732, AJ630733Clone PLY-P1-77 (AY354779)99c,d
AJ630734Clone EBAC40 (AF268229)97b
AJ630735Clone 1A5 (AY274868)99b
AJ630736Clone 1D10 (AY274838)99d
AJ630737Clone 1A3 (AY274867)98c
AJ630738Clone ARCTIC.123 (AF277538)96d
AJ630739Clone MERTZ_OCM_182 (AF424352)90d
AJ630740, AJ630741Clone OCS155 (AF001652)99Actinobacteriaa,b,c
AJ630742, AJ630743Clone SAa03 (AY124414)99a
AJ630744Clone SAb10 (AY124422)99a
AJ630745Clone FBP234 (AY250866)93b
  • a a, clone library of North Sea surface water; b, library of sorted cells after hybridization with probe EUB338; c, library of sorted cells after hybridization with probe BET42a; d, library of sorted cells after hybridization with probe CF319a.