TABLE 1.

Genes, restriction enzymes used, and alignment information

GeneaExpected size (bp)Restriction enzyme(s)Alignment sequenceAccession no.AlignmentbNo. of aac in alignment
aclB312DdeI/MseI7G3 (A. pompejana symbiont fosmid clone)AY312991MVAGG…GGP96
6C6 (A. pompejana symbiont fosmid clone)AY312990
Lupinus albusCAC86996
Arabidopsis thalianaAAL25637
Caenorhabditis elegansNP_508280
Mus musculusAF332051.1
Homo sapiensXP036462
oorA278 (110)HaeIII/MseIHelicobacter pyloriAF021094FFGG. …GLPT (FFGG…QMEDE)91 (36)
Hydrogenobacter thermophilusAB046578
Thermotoga maritimaH72323
Thermoanaerobacter tengcongenisAE013094
Geobacter metallireducensNZ_AAAS01000001
Desulfovibrio desulfuricans G20NZ_AABI01000006
Campylobacter jejuniNC_002163
porA201NoneChlorobium tepidum TLSNC_002932PFP…GE/GS/R51
Helicobacter pyloriNP_223754.1
Clostridium tetani E88NP_783049
Thermotoga maritimaO05651
Archaeoglobus fulgidus DSM 4304NP_070527
Pyrococcus furiosusNP_578695
Methanococcus jannaschiiNP_247239
nifJ474AluIFusobacterium nucleatum subsp. vincentiiEAA24989GCGE…WAYDI137
Nostoc sp. strain PCC 7120NP_485951
Desulfitobacterium hafnienseZP_00098862
Desulfovibrio desulfuricans G20ZP_00128897
Geobacter metallireducensZP_00080327
Thermoanaerobacter tengcongenisNP_622125
Clostridium pasteurianumAAC18834
Chlorobium tepidum TLSAAM72853
Salmonella enterica serotype Typhimurium LT2NP_460610
Escherichia coliAAC74460
Campylobacter jejuniNP_282614
cbbL711AluI/RsaIChlamydomonas reinhardtiiJ01399QPFM. …HVHR76
Anacystis nidulansX03220
Synechococcus sp. strain WH7803U46156
Hydrogenovibrio marinusD43622
Thiobacillus ferrooxidansX70355
Thiobacillus sp.M34536
Thiobacillus denitrificansL42940
Hydrogenophilus thermoluteolusD30764
cbbM328HaeIIIRhodospirillum rubrumX00286QVFC. …TARR76
Rhodobacter capsulatusU23145
Thiobacillus denitrificansL37437
Riftia pachyptila endosymbiontAF047688
rbcLMethanococcus jannaschiiU67564
  • a aclB encodes ATP citrate lyase, beta subunit; oorA encodes 2-oxoglutarate:ferredoxin oxidoreductase, alpha subunit; porA encodes pyruvate:ferredoxin oxidoreductase, alpha subunit; nifJ encodes pyruvate flavodoxin/ferrodoxin oxidoreductase; cbbL encodes ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit; cbbM encodes form II ribulose 1,5-bisphosphate carboxylase/oxygenase; and rbcL encodes form III ribulose-bisphosphate carboxylase.

  • b Alignment of sequence from the indicated amino acids to the indicated amino acids.

  • c aa, amino acids.