TABLE 2.

Relatedness of Crater Lake isolates to known organisms, Crater Lake clone library sequences, and previously described freshwater clusters

Isolate HTCC no(s). (GenBank accession no.)Nearest described relative (GenBank accession no.) (reference)Sequence similarity (%)Crater Lake clone relativesFreshwater cluster affiliations
500-502 (AY584571 ) Sphingomonas sp. strain B18 (AF410927 ) (49)97CL0-16, -60, -92, CL500-33 Sphingomonas a
503-513 (AY584572 ) Sphingomonas sp. strain B18 (AF410927 ) (49)98CL0-16, -60, -92, CL500-33 Sphingomonas a
GOBB3-C201c
515-517 (AY584573 ) Rhodobacter sphaeroides (X53855 ) (20)95CL0-56, -89 Rhodobacter
518-524 (AY584574 ) Iodobacter fluviatilis (AJ247214 ) (29)99
525-527 (AY584575 ) Aquaspirillum autotrophicum (AB074524 ) (9)96
528-539 (AY584576 ) Polaromonas vacuolata (U14585 ) (21)97CL0-90, 99, 102, 119, CL500-45, -61 Comamonadaceae a
Beta Ib
GKS16c
540 (AY584577 ) Aquaspirillum delicatum (AF078756 ) (9)96 Comamonadaceae a
Beta Ib
541-542 (AY584578 )Antarctic bacterium R-7724 (AJ440986 ) (46)98 Comamonadaceae a
Beta Ib
543 (AY584579 )Isolate MWH-HuK1 (AJ550665 ) (14)99Beta IIb
P. necessariusc
544-549 (AY584580 ) Pseudomonas lini (AY035996 ) (8)98
550 (AY584581 ) Pseudomonas sp. strain NZ099 (AF388207 ) (13)97
551 (AY584582 ) Pseudomonas sp. strain NZ017 (AY014805 ) (13)96
552 (AY584583 ) Flectobacillus isolate EP293 (AF493693 ) (31)98CL0-73, -103 Flectobacillus a
CF IIIb
GKS2-216c
553 (AY584584 ) Flectobacillus isolate EP293 (AF493693 ) (31)97 Flectobacillus a
CF IIIb
GKS2-216c
554 (AY584585 ) Flavobacterium limicola (AB075230 ) (43)98 Flavobacterium a
CF IIb
555 (AY584586 ) Geodermatophilus sp. strain BC496 (AJ296066 ) (45)98
  • a As described by Urbach et al. (44).

  • b As described by Glöcker et al. (12).

  • c As described by Zwart et al. (51).