TABLE 1.

Homologous 16S rRNA sequences of probe Pand822, its target, and its closest relatives

Organism or sequenceProbe or target sequencea
Probe (3′-5′)3′-AGGTGATCGACGACCCCTAA-5′
Target sequence (5′-3′)5′-UCCACUAGCUGCUGGGGAUU-3′
Isolate PG-015′-UCCACUAGCUGCUGGGGAUU-3′
Pandoraea apista strain LMG 16407 (AF139173)5′---A-----U--U---------3′
Pandoraea sp. AU1775 (AY043377)5′---A-----U--U---------3′
Pandoraea norimbergensis (AY268174)5′---A-----U--U---------3′
Pandoraea sp. G8107 (AF247695)5′---A-----U--U---------3′
Pandoraea pnomenusa (AF139174)5′---A-----U--U---------3′
Pandoraea pulmonicola (AF139175)5′---A-----U--U---------3′
Pandoraea sputorum (AF139176)5′---A-----U--U---------3′
Burkholderia cepacia strain LMG 14294 (AF097553)5′---A-----U--U---------3′
Burkholderia pseudomallei (Ara + biotype) (AF093051)5′---A-----U--U---------3′
Burkholderia sp. MN 182.2 (AJ313026)5′---A-----U--U---------3′
Burkholderia phenazinium (U96936)5′---A---G-U--UC---UC---3′
Burkholderia sacchari (AF263278)5′---A-----U--UC---CC---3′
Burkholderia stabilis (AF148554)5′---A-----U--U---------3′
Burkholderia vietnamiensis (U96929)5′---A-----U--U---------3′
Uncultured eubacterium WD258 (AJ292640)5′---A-----U--U---------3′
Pseudomonas cepacia (L28675)5′---A-----U--U---------3′
Pseudomonas caryophylli (X67039)5′---A-----U--U---------3′
  • a Only mismatching nucleotides are indicated. Matching nucleotides are indicated with a dash.