TABLE 2.

Names, nearest reference sequences, and frequency of recovery for clones recovered at least 10 times

Clone nameNearest cpn60 neighborGenBank accession no.% DNA identityFrequency (no. of clones)
CornBarleyWheatTotal
c10_c06 Lactobacillus amylovorus ATCC 33198 AY562571 99.8269102208579
c02_a03 Lactobacillus amylovorus ATCC 3319899.6179752166
c01_h12 Lactobacillus amylovorus ATCC 3319899.3159237144
c13_g09 Lactobacillus amylovorus ATCC 3319899.3264176143
c13_h04 Lactobacillus amylovorus ATCC 3319899.5483754139
c02_e07 Lactobacillus amylovorus ATCC 3319899.17582691
c02_b12 Lactobacillus johnsonii NCC 533 NC_005362 99.146222391
c01_g02 Clostridium disporicum ATCC 43838 AY562569 84.543103386
c03_c06 Lactobacillus reuteri (Biologics) AY562572 97.833192173
c01_f10 Lactobacillus vaginalis ATCC 49540 AY123651 88.98213362
c09_f09 Lactobacillus amylovorus ATCC 3319899.85421461
c01_c10 Lactobacillus amylovorus ATCC 3319899.619192159
c13_h06 Lactobacillus reuteri (Biologics)97.629111959
c13_h12 Lactobacillus amylovorus ATCC 3319899.61793056
c05_h11 Streptococcus alactolyticus ATCC 4307 AY123648 100.0125430
c02_c09 Clostridium disporicum ATCC 4383884.4182727
c02_b09 Lactobacillus amylovorus ATCC 3319899.5134724
c13_g07 Lactobacillus amylovorus ATCC 3319899.694922
c02_d10 Lactobacillus johnsonii NCC 53398.9136322
c13_d02 Lactobacillus amylovorus ATCC 3319899.3412622
c02_d04 Lactobacillus johnsonii NCC 53399.3114621
c06_a02 Lactobacillus crispatus CECT 4840T AY562570 99.6314219
c09_f02 Lactobacillus amylovorus ATCC 3319899.6214218
c13_h07 Lactobacillus vaginalis ATCC 4954088.7612018
c11_g09 Lactobacillus amylovorus ATCC 3319899.693517
c02_e05 Lactobacillus reuteri (Biologics)96.6110516
c12_h03 Lactobacillus reuteri (Biologics)97.572413
c03_b02 Lactobacillus crispatus CECT 4840T99.619313
b02_b02 Lactobacillus amylovorus ATCC 3319899.308412
c12_f06 Lactobacillus johnsonii NCC 53398.925512
c01_d01 Lactobacillus amylovorus ATCC 3319899.833410
c02_d09 Lactobacillus johnsonii NCC 53398.742410
c10_d08 Lactobacillus amylovorus ATCC 3319899.652310