TABLE 2.

Numbers of species and clones detected in 16S rRNA sequences

Bacterial groupHuman sequencesHFA mouse sequences
1 wka4 wk8 wk
No.Ratio (%)No.Ratio (%)No.Ratio (%)No.Ratio (%)
s/pbClones/pClones/pClones/pClones/pClones/pClones/pClones/pClone
Bacteroides111913.610.46737.525.94450.030.851623.838.1
Clostridium cluster I232.51.6NDcNDNDNDNDND
Clostridium cluster IV235428.429.53418.814.81412.530.83314.37.1
Clostridium cluster IX6147.47.7NDNDNDNDNDND
Clostridium cluster XIVa295335.829.06837.529.62225.015.47733.316.7
Clostridium cluster XIVb121.21.1NDNDNDNDNDND
Clostridium cluster XVI1241.213.1NDNDNDNDNDND
Clostridium cluster XVIII111.20.5NDNDNDNDNDND
Unclass Clostridium373.73.8NDNDNDNDNDND
Streptococcus232.51.6NDNDNDNDNDND
Actinobacteria121.21.1NDNDNDNDNDND
Deltaproteobacteria111.20.5NDNDNDND114.82.4
GammaproteobacteriaNDND186.329.6NDNDNDND
VerrucomicrobiumNDNDNDND1312.523.141419.033.3
CoriobacteriaceaeNDNDNDNDNDND114.82.4
Total8118310010016271001008131001002142100100
  • a The time point after administration.

  • b s/p, species or phylotype.

  • c ND, not detected as clones.