TABLE 2.

Numbers of species and clones detected in 16S rRNA sequences

Bacterial groupHuman sequencesHFA mouse sequences
1 wka4 wk8 wk
No.Ratio (%)No.Ratio (%)No.Ratio (%)No.Ratio (%)
s/pbClones/pClones/pClones/pClones/pClones/pClones/pClones/pClone
Bacteroides 111913.610.46737.525.94450.030.851623.838.1
Clostridium cluster I232.51.6NDcNDNDNDNDND
Clostridium cluster IV235428.429.53418.814.81412.530.83314.37.1
Clostridium cluster IX6147.47.7NDNDNDNDNDND
Clostridium cluster XIVa295335.829.06837.529.62225.015.47733.316.7
Clostridium cluster XIVb121.21.1NDNDNDNDNDND
Clostridium cluster XVI1241.213.1NDNDNDNDNDND
Clostridium cluster XVIII111.20.5NDNDNDNDNDND
Unclass Clostridium373.73.8NDNDNDNDNDND
Streptococcus 232.51.6NDNDNDNDNDND
Actinobacteria 121.21.1NDNDNDNDNDND
Deltaproteobacteria111.20.5NDNDNDND114.82.4
GammaproteobacteriaNDND186.329.6NDNDNDND
Verrucomicrobium NDNDNDND1312.523.141419.033.3
CoriobacteriaceaeNDNDNDNDNDND114.82.4
Total8118310010016271001008131001002142100100
  • a The time point after administration.

  • b s/p, species or phylotype.

  • c ND, not detected as clones.