TABLE 1

Distribution of methane monooxygenases, methanol dehydrogenases, and methanobactin in select methanotrophs as determined via genomic interrogation for pmoA, mmoX, mxaFI, xoxF, and mbnBC

Phylum or classFamilyStrain (GenBank accession no.)pMMOsMMOMxa-MeDHXox-MeDHMB
GammaproteobacteriaMethylococcaceaeMethylobacter tundripaludum SV96 (NZ_AEGW00000000)YesNoYesYesNo
Methylocaldum szegediense O-12 (NZ_ATXX00000000.1)YesNoYesYesNo
Methylococcus capsulatus Bath (NC_002977.6)YesYesYesYesNo
Methylogaea oryzae JCM 16910 (NZ_BBDL00000000.1)YesNoYesYesNo
Methyloglobulus morosus KoM1 (NZ_AYLO00000000.1)YesNoYesYesNo
Methylomarinum vadi strain IT-4 (JPON01000001.1)YesNoYesYesNo
Methylomagnum ishizawai strain 175 (FXAM00000000.1)YesYesYesYesNo
Methylomicrobium album BG8 (AFJF00000000.2)YesNoYesYesNo
Methylomicrobium buryatense 5G (AOTL00000000.1)YesYesYesYesNo
Methylomonas sp. LW13 (JNLB00000000.1)YesYesYesYesNo
Methylomonas denitrificans FJG1 (CP014476.1)YesNoYesYesNo
Methylosarcina fibrata AML-C10 (ARCU00000000.1)YesNoYesYesNo
Methyloprofundus sedimenti strain WF1 (LPUF00000000.1)YesNoYesYesNo
Methyloterricola oryzae strain 73a (JYNS00000000.1)YesNoYesYesNo
Methylovulum miyakonense HT12 (AQZU00000000.1)YesYesYesYesNo
MethylothermaceaeMethylohalobius crimeensis 10Ki (ATXB00000000.1)YesNoYesYesNo
AlphaproteobacteriaBeijerinckiaceaeMethylocapsa acidiphila B2 (ATYA00000000.1)YesNoYesYesNo
Methylocella silvestris BL2 (NC_011666.1)NoYesYesYesNo
Methyloferula stellata AR4 strain AR4T (ARWA00000000.1)NoYesYesYesNo
MethylocystaceaeMethylocystis sp. strain SC2 (NC_018485.1)YesNoYesYesYes
Methylocystis sp. strain LW5 (JMKQ00000000.1)YesYesYesYesYes
Methylosinus trichosporium OB3b (ADVE00000000.2)YesYesYesYesYes
NC10UnclassifiedCandidatus Methylomirabilis oxyfera” (NSJN00000000.1)YesNoYesYesNo
VerrucomicrobiaMethylacidiphilaceaeMethylacidiphilum fumariolicum SolV (CAHT00000000.1)YesNoNoYesNo