TABLE 4

SNPs, indels, and large deletions of Escherichia coli MG1655 derivative strains

Mutant strainGenome position(s) in the WTaWT baseMutant base(s)SNP/indel in geneLocus tagEcoGene accession no.Result of mutation
CAR3623620–3718650bΔ(yhhJ-mokA)Deletion of 75 genes
4275900 (92.15′)GTsoxRb4063EG10957Predicted SoxR missense mutation D137Y
CIT1617171 (34.85′)+AmarRb1530EG11435MarR E10 frameshift
3708613 (79.89′)ACIntergenic eptB-yhjXIntergenic b3546-b3547Intergenic EG12267-EG12268
3877671 (83.53′)−GGTgyrBb3699EG10424GyrB in-frame ΔG157
LIM485340 (10.45′)+CacrRb0464EG12116ArcR F119 frameshift
1972710–1976520bΔ(cheA-insA)Deletion of 3 genes
2800250–2811150bΔ(nrdE-enrB)Deletion of 9 genes
  • a Values in parentheses represent the position of the mutation in a “100-minute map.”

  • b Endpoints of large chromosomal deletions.