TABLE 1.

Regions of DNA sequence and ORF similarity between plasmids p49879.1 and p49879.2

p49879.1 ORF (no. of encoded aa) or DNA sequencep49879.2 ORF (no. of encoded aa) or DNA sequence% Amino acid identity% Nucleotide identity (length of compared region [bp])Description of proteins in database to which plasmid ORF is related
ORF 19.1 (94)ORF 27.2 (110)71.893 (3,305)MobS/MobC mobilization accessory protein present on IncQ-like plasmids (90-99 aa)
ORF 18.1 (237)ORF 26.2 (504)76.4 (237 aa)93 (3,305)MobL-like mobilization DNA relaxase protein present on plasmid pTF1 (378 aa)
ORF 13.1 (989)ORF 11.2 (961)97.199.92 (3,761)TnpA, transposase-like protein related to Tn3962 (990 aa)
ORF 12.1 (199)ORF 12.2 (198)99.099.92 (3,761)TnpR, resolvase-like protein related to those of Erwinia spp. (194 aa)
ORF 7.1 (320)ORF 19.2 (320)78.184 (2,273)Lfe211p1 protein, present in L. ferrooxidans L3.2 and upregulated 1.9-fold upon ammonia starvation (216-aa partial sequence) (17)
ORF 6.1 (98)ORF 18.2 (98)92.984 (2,273)HU-like DNA-binding protein (90-91 aa)
ORF 4.1 (87)ORF 23.2 (86)47.948 (86)DinJ, DNA damage-inducible protein (87 aa)
ORF 2.1 (187)ORF 13.2 (187)89.387 (695)Uncharacterized protein conserved among cyanobacteria (187 aa)
bp 24289-24463bp 10980-11153NAa98 (173)Noncoding region
  • a NA, not applicable.