TABLE 2.

Affiliations of sequenced tet genes, as determined by comparison to GenBank sequences

tet classtet clone; prevalence (accession no.)Most similar match (accession no.)Identity (%)
tet(A)BC-AC-1; 8/10 (AY171576)Gram-negative bacteria, Tn1721 (X61367)100
BC-AC-2; 1/10 (AY171577)Gram-negative bacteria, Tn1721 (X61367)98.2
tet(C)BC-AC-3; 1/10 (AY171578)Aeromonas salmonicida, pRAS3.2 (AY043299)99.8
tet(G)BC-G-1; 3/14 (AY171579)Salmonella enterica serovar Typhimurium (AF261825)94.2
BC-G-2; 1/14 (AY171580)Salmonella enterica serovar Typhimurium (AF261825)94.4
BC-G-3; 2/14 (AY171581)Mannheimia haemolytica (AJ276217)96.0
BC-G-4; 3/14 (AY171582)Pseudomonas sp./pPSTG1 (AF133139)100
BC-G-5; 2/14 (AY171583)Pseudomonas sp./pPSTG1 (AF133139)98.3
BC-G-6; 3/14 (AY171584)Pseudomonas sp./pPSTG1 (AF133139)95.6
tet(O)BC-RPP-1; 2/31 (AY171585)Campylobacter jejuni (M18896)99.4
BC-RPP-2; 3/31 (AY171586)Streptococcus mutans (M20925)99.0
BC-RPP-3; 2/31 (AY171587)Campylobacter jejuni (M18896)94.8
tet(M)BC-RPP-4; 1/31 (AY171588)Clostridium septicum (AB054984)98.9
tet(Q)BC-RPP-5; 3/31 (AY171589)Bacteroides fragilis tet(Q)3 (Y08615)96.5
BC-RPP-6; 11/31 (AY171590)Bacteroides fragilis tet(Q)3 (Y08615)100
BC-RPP-7; 1/31 (AY171591)Bacteroides fragilis tet(Q)3 (Y08615)96.7
BC-RPP-8; 1/31 (AY171592)Bacteroides fragilis tet(Q)3 (Y08615)96.0
BC-RPP-9; 2/31 (AY171593)Bacteroides fragilis tet(Q)3 (Y08615)97.8
tet(W)BC-RPP-10; 1/31 (AY171594)Butyrivibrio fibrisolvens (AJ427421)99.9
BC-RPP-11; 2/31 (AY171595)Bifidobacterium sp. strain ISO3519 (AF202986)96.8
BC-RPP-12; 2/31 (AY171596)Arcanobacterium pyogenes (AY049983)94.9