TABLE 2.

Prevalence of genes and/or traits in a mixed genotyping clustera

Gene, strain, or replicon% of prevalence
UPECNMECAPECOverall
% of total8.63.654.910.1
traT 100.098.098.198.1
sitA 100.0100.098.198.1
iutA 78.998.093.593.5
hlyF 94.794.088.988.9
etsA 100.094.090.790.7
etsB 94.792.089.889.8
ompT chrom89.596.092.692.6
iss epi89.580.088.988.9
iroN 100.086.090.790.7
cvaA 100.096.098.198.1
cvaB5 100.096.098.198.1
cvaB3 94.796.091.791.7
cvaC 89.588.088.088.0
cmi 15.82.012.012.0
cba 21.130.029.629.6
tsh 21.144.042.642.6
eitA 10.50.011.111.1
eitB 10.50.011.111.1
UI10515.30.04.64.6
UI10240.00.00.90.9
parB 0.00.00.90.9
umuC 0.00.00.90.9
adhE 0.00.00.00.0
papA 73.726.034.334.3
papC 73.730.040.740.7
papEF 84.226.039.839.8
papG1 0.00.00.00.0
papG2 73.718.037.037.0
papG3 5.30.00.90.9
kps1 94.790.088.988.9
kps2 100.0100.098.198.1
kps3 0.02.00.90.9
malX 100.072.078.778.7
ireA 63.224.038.038.0
ibeA 31.680.071.371.3
gimB 73.778.067.667.6
vat 73.7100.088.988.9
cnf1 0.00.01.91.9
fyuA 100.082.089.889.8
cdtB 5.356.028.728.7
bmaE 0.00.00.00.0
sfafoc 21.176.050.050.0
hlyD 0.00.00.00.0
rfc 0.04.01.91.9
ompT chrom100.040.072.272.2
fliC H7 68.472.058.358.3
focG 0.00.00.00.0
iha 5.334.016.716.7
afa 0.040.018.518.5
sfaS 15.856.039.839.8
IncB/O replicon10.548.025.925.9
IncFIC replicon0.02.02.82.8
IncA/C replicon0.00.00.00.0
IncP replicon5.310.013.013.0
IncT replicon0.00.00.00.0
IncK/B replicon0.02.00.90.9
IncW replicon0.00.00.00.0
IncFIIA replicon0.00.02.82.8
IncFIA replicon0.02.00.90.9
IncFIB replicon68.492.084.384.3
IncY replicon5.32.01.91.9
IncI1 replicon15.82.020.420.4
IncX replicon0.00.00.00.0
IncHI1 replicon5.30.01.91.9
IncN replicon0.00.00.90.9
IncHI2 replicon0.00.00.90.9
IncL/M replicon0.00.01.91.9
Phylo A0.02.05.65.6
Phylo B10.00.01.91.9
Phylo B2100.096.089.889.8
Phylo D0.02.02.82.8
  • a The cluster shown is that of cluster 2 from Fig. 1. epi, episomal; chrom, chromosomal; Phylo, phylotype.