TABLE 2.

Prevalence of genes and/or traits in a mixed genotyping clustera

Gene, strain, or replicon% of prevalence
UPECNMECAPECOverall
% of total8.63.654.910.1
traT100.098.098.198.1
sitA100.0100.098.198.1
iutA78.998.093.593.5
hlyF94.794.088.988.9
etsA100.094.090.790.7
etsB94.792.089.889.8
ompT chrom89.596.092.692.6
iss epi89.580.088.988.9
iroN100.086.090.790.7
cvaA100.096.098.198.1
cvaB5100.096.098.198.1
cvaB394.796.091.791.7
cvaC89.588.088.088.0
cmi15.82.012.012.0
cba21.130.029.629.6
tsh21.144.042.642.6
eitA10.50.011.111.1
eitB10.50.011.111.1
UI10515.30.04.64.6
UI10240.00.00.90.9
parB0.00.00.90.9
umuC0.00.00.90.9
adhE0.00.00.00.0
papA73.726.034.334.3
papC73.730.040.740.7
papEF84.226.039.839.8
papG10.00.00.00.0
papG273.718.037.037.0
papG35.30.00.90.9
kps194.790.088.988.9
kps2100.0100.098.198.1
kps30.02.00.90.9
malX100.072.078.778.7
ireA63.224.038.038.0
ibeA31.680.071.371.3
gimB73.778.067.667.6
vat73.7100.088.988.9
cnf10.00.01.91.9
fyuA100.082.089.889.8
cdtB5.356.028.728.7
bmaE0.00.00.00.0
sfafoc21.176.050.050.0
hlyD0.00.00.00.0
rfc0.04.01.91.9
ompT chrom100.040.072.272.2
fliCH768.472.058.358.3
focG0.00.00.00.0
iha5.334.016.716.7
afa0.040.018.518.5
sfaS15.856.039.839.8
IncB/O replicon10.548.025.925.9
IncFIC replicon0.02.02.82.8
IncA/C replicon0.00.00.00.0
IncP replicon5.310.013.013.0
IncT replicon0.00.00.00.0
IncK/B replicon0.02.00.90.9
IncW replicon0.00.00.00.0
IncFIIA replicon0.00.02.82.8
IncFIA replicon0.02.00.90.9
IncFIB replicon68.492.084.384.3
IncY replicon5.32.01.91.9
IncI1 replicon15.82.020.420.4
IncX replicon0.00.00.00.0
IncHI1 replicon5.30.01.91.9
IncN replicon0.00.00.90.9
IncHI2 replicon0.00.00.90.9
IncL/M replicon0.00.01.91.9
Phylo A0.02.05.65.6
Phylo B10.00.01.91.9
Phylo B2100.096.089.889.8
Phylo D0.02.02.82.8
  • a The cluster shown is that of cluster 2 from Fig. 1. epi, episomal; chrom, chromosomal; Phylo, phylotype.