TABLE 1.

Analysis of isolates on the basis of partial 16S rRNA gene sequences, including the closest relatives as identified by using the BLAST program in the GenBank databases

Phylogenetic group (division, subdivision)IsolateSequence length (bp)Top match [GenBank accession no.]aNucleotide identity (%)
Acidobacteria, subdivision 1Ellin408438env. WR805 [AJ292771]98.4
Ellin457429env. WR805 [AJ292771]96.7
Actinobacteria, ActinobacteridaeEllin402412(Dactylosporangium sp.), str. SF2809 [AB017374]b97.8
Ellin406400Micromonospora peucetica, str. DSM 43363 [X92603]93.1
Ellin410400Micromonospora fulvoviolaceus, str. 71-m115 [X92619]98.4
Ellin412402Micromonospora fulvoviolaceus, str. 71-m115 [X92619]99.0
Ellin422403env. WR169 [AJ233561]99.5
Ellin423436Actinoplanes sp., str. IM-3145 [AF131348]94.3
Ellin419421Leifsonia poae, str. VKM Ac-1401 [AF116342]99.7
Ellin432447Leifsonia poae, str. VKM Ac-1401 [AF116342]98.9
Ellin416435env. WR160 [AJ233560]93.1
Ellin420407env. WR160 [AJ233560]96.3
Ellin424424env. WR160 [AJ233560]94.8
Ellin425446env. WR160 [AJ233560]93.3
Ellin438455env. WR160 [AJ233560]93.8
Actinobacteria, RubrobacteridaeEllin404478env. S12_712 [AF078396]93.8
Ellin442433env. Ac18 [AF388343]92.2
Proteobacteria, α subclassEllin413410(Methylobacterium sp.), str. 6c [AJ223453]99.8
Ellin414401(Methylobacterium sp.), str. 6c [AJ223453]98.5
Ellin426400(Sphingomonas sp.), env. D64 [AF337832]96.8
Ellin431426Afipia sp., str. G9018 [U87769]99.8
Ellin435430Nitrobacter sp., str. LL [L11662]99.5
Ellin441406Phenylobacterium immobile, str. E [Y18216]94.2
Ellin429407env. wr0111 [AJ295550]98.3
Ellin452414env. wr0111 [AJ295550]95.4
Proteobacteria, γ subclassEllin405480env. Ac53 [AF388360]95.9
Ellin433468env. BIfci40 [AJ318117]98.7
Low-G+C-content gram-positive bacteriaEllin411432(Bacillus), str. G11014 [AB011787]98.8
Ellin427465env. C006 [AY037665]93.2
Verrucomicrobia, subdivision 2Ellin428481env. CO19 [AF013522]94.1
  • a Top match as determined by the BLAST method. The BLAST program was described by Altschul et al. (1); str. denotes 16S rRNA gene sequences from cultivated bacteria, while env. denotes sequences detected as PCR-amplified products in complex microbial communities.

  • b Parentheses indicate that a genus affiliation is tentative based on 16S rRNA gene sequence similarities.