TABLE 2.

List of representative isolates and sequences included in the MLST analysis

Taxonomic groupIsolate no.Location of isolationHabitat or isolate originSequence sourceIsolate reference or source
E. coliEDL933MichiganHumanxBASE7
042Lima, PeruHumanxBASE7
e2348/69EnglandHumanxBASE7
MG1655United StatesHumanxBASE7
CFT073MarylandHumanxBASE7
B692AustraliaBirdMLSTThis study
E677AustraliaEnvironmentMLSTThis study
S. flexneri2457TJapanHumanxBASE7
E. fergusoniiATCC 35469TMLST
B253AustraliaBirdMLSTThis study
B372AustraliaBirdMLSTThis study
B691AustraliaBirdMLSTThis study
E. albertii9194BangladeshHumanMLST23
19982BangladeshHumanMLST23
B090AustraliaBirdMLSTThis study
B101AustraliaBirdMLSTThis study
B156AustraliaBirdMLSTThis study
B198AustraliaBirdMLSTThis study
B249AustraliaBirdMLSTThis study
B992AustraliaBirdMLSTThis study
B1086AustraliaBirdMLSTThis study
K-1BangladeshHumanMLST23
C-425BangladeshHumanMLST23
CIB827AustraliaBirdMLSTThis study
E1492AustraliaEnvironmentMLSTThis study
E807AustraliaEnvironmentMLSTThis study
H442AustraliaHumanMLSTThis study
M863AustraliaMammalMLSTThis study
TW10509Guinea BissauHumanMLSTThis study
TW11930Guinea BissauHumanMLSTThis study
TW11966Guinea BissauHumanMLSTThis study
CIIB1147AustraliaBirdMLSTThis study
CIIITW09231MichiganFreshwater beachMLSTThis study
TW09276MichiganFreshwater beachMLSTThis study
TW09266MichiganFreshwater beachMLSTThis study
TW09254MichiganFreshwater beachMLSTThis study
B685AustraliaBirdMLSTThis study
TA04AustraliaMammalMLSTThis study
CIVTW14182MichiganFreshwater beachMLSTThis study
TW11588Puerto RicoSoilMLSTThis study
B49AustraliaBirdMLSTThis study
H605AustraliaHumanMLSTThis study
CVTW09308MichiganFreshwater beachMLSTThis study
B1225AustraliaBirdMLSTThis study
B646AustraliaBirdMLSTThis study
E1118AustraliaEnvironmentMLSTThis study
E1195AustraliaEnvironmentMLSTThis study
E1196AustraliaEnvironmentMLSTThis study
E471AustraliaEnvironmentMLSTThis study
E472AustraliaEnvironmentMLSTThis study
E620AustraliaEnvironmentMLSTThis study
M1108AustraliaMammalMLSTThis study
TA290AustraliaMammalMLSTThis study
TW14263MichiganRacoonMLSTThis study
TW14264MichiganSurface waterMLSTThis study
TW14265MichiganSurface waterMLSTThis study
TW14266MichiganSurface waterMLSTThis study
TW14267MichiganSurface waterMLSTThis study
RL325/96DogMLST63
Z205ParrotMLST63
S. entericaTyphi TY2United StatesHumanxBASE7
Typhimurium LT2United StatesHumanxBASE7
Enteritidis PT4xBASE7
Gallinarum 287/91xBASE7
S. bongori12149United KingdomHumanxBASE7