TABLE 1.

Main features and Cox subunits present in the analyzed fosmids

FosmidLength (bp)% GC contentCoverage (times)Cox subunit(s) and characteristicsa
KM3-41-E1244,13243.0515.0CoxL: (f.I)R. marinus DSM 4252 (11,240), 86%; CoxM: T. roseum DSM 5159 (A0566), 71%; CoxS: R. marinus DSM 4252 (11,250), 84%; CoxF: R. marinus DSM 4252 (15,230), 60%; CoxG: R. marinus DSM 4252 (15,230), 77%; CoxD: T. roseum DSM 5159 (A0563), 56%; CoxE: *T. roseum DSM 5159 (1,210), 61%
CoxL: (f.II) R. marinus DSM 4252 (5,520), 69%; CoxM: R. marinus DSM 4252 (05510), 67%; CoxS: T. terrenum ATCC BAA-798 (23,480), 84%; CoxG: Pseudovibrio sp. strain JE062 (4,363), 60%
KM3-45-H1137,81341.1534.9CoxL: *S. thermophilus DSM 20745 (709), 73%; CoxM: R. marinus DSM 4252 (5,510), 66%; CoxD: R. marinus DSM 4252 (10), 77%; CoxE: T. roseum DSM 5159 (1,210), 64%
CoxF: Alkalilimnicola ehrlichii MLHE-1 (1,569), 56%
KM3-60-B0137,12442.7215.5CoxL: (f.II) R. castenholzii DSM 13941 (842), 79%; CoxM: R. marinus DSM 4252 (5,510), 65%; CoxS: *Janibacter sp. strain HTCC2649 (8,714), 86%
KM3-26-C0337,24751.7935.8CoxL: (f.II) *R. marinus DSM 4252 (5,520), 70%
KM3-28-H1237,27558.1915.2CoxL: (f.II) T. terrenum ATCC BAA-798 (12,870), 63%
KM3-29-C0236,75751.4824.9CoxL: *S. thermophilus DSM 20745 (709), 66%
KM3-54-A0533,62453.8215.1CoxL: *B. japonicum USDA 110 (3,350), 60%; CoxM: S. thermophilus DSM 20745 (3,193), 60%; CoxG: Nocardioides sp. strain JS614 (232), 55%
  • a Subunit present, form I (f.I), form II (f.II), truncated protein (*), closest strain hit, number of ORFs (in parentheses), and percent similarity are also shown.