TABLE 1.

Single nucleotide polymorphism and haplotype variation among 65 L. monocytogenes lineage 1 isolates

RegionPositionaGenesbSNPsHaplotypes
VGC209009-217550prfA, plcA, hly, mpl, actA, plcB10221
LMO341498-343450LMOf2365_0319-032110723
INL484557-488736inlA, inlB14522
SIG930033-931913rsbV, rsbW, sigB, rsbX1110
PDH1079888-1082533pdhA, pdhB, pdhC3416
AMI1533277-1535138ami, hisS67
ACC1592519-1594571accD, dnaE810
  • a Corresponding nucleotide positions in the genome sequence of L. monocytogenes strain 4b F2365 (NC002973.6).

  • b Gene designations follow the annotation of the F2365 genome or homologous sequences from L. monocytogenes EGD-e (NC003210).