TABLE 1.

Diversity of clone libraries made from each sample

Clone library and sample dateNo. of clonesNo. of genotypesNo. of clones of most-abundant genotype (MAS)aNucleotide diversitybShannon indexc
ITS
    Copco
        13 June241015 (ITS-2)0.005 ± 0.0031.27
        11 July26522 (ITS-2)0.004 ± 0.0030.48
        8 August26135 (ITS-2)0.029 ± 0.0152.22
5 (ITS-4)
        23 August322111 (ITS-1)0.031 ± 0.0161.93
        19 September231410 (ITS-1)0.003 ± 0.0020.70
        17 October24716 (ITS-1)0.005 ± 0.0030.73
    UKL
        21 August1799 (ITS-2)0.053 ± 0.0271.08
cpcBA
    Copco
        13 June1477 (CPC-A)0.014 ± 0.0070.90
        11 July21913 (CPC-A)0.002 ± 0.0011.29
        8 August1698 (CPC-A)0.007 ± 0.0041.12
        23 August17612 (CPC-A)0.001 ± 0.0010.44
        19 September17154 (CPC-B2)0.014 ± 0.0071.87
        17 October23612 (CPC-B1)0.022 ± 0.0111.19
    UKL
        21 August19416 (CPC-A)0.013 ± 0.0070.61
  • a For GenBank accession numbers of the listed most-abundant sequences (MAS), see Fig. 3 and 5.

  • b Nucleotide diversity obtained using Arlequin version 3.11.

  • c Shannon index obtained using Fastgroup II (set at 100% sequence identity with gaps).