TABLE 1

Predicted MacR recognition sequences upstream of putative lipoprotein and membrane protein genes

Gene IDGene annotationPredicted recognition sequenceaLocation
SCO0607LipoproteinTGAGTACccGTACTCA−127b
SCO1700Integral membrane proteinTGAGTACgcGAACTGA−64
SCO4011(MmpC)Integral membrane proteinTGAGTAGgcGTACTCA−15
SCO4225Integral membrane proteinTGAGTACggGTACTCA−91
SCO4924(MmpB)Integral membrane proteinTGAGTACccGTACTCA−51
SCO6728(MmpA)Integral membrane proteinTCCGTACggATACTCA−51
SCO7460LipoproteinTGAGTACggGAACTCA−76
SCO7613Integral membrane proteinTGAGTATgcGCGCTCA−51
MacR consensus binding sequenceTGAGTACnnGTACTCA
  • a Nucleotides in red indicate mismatches with the consensus sequence for MacR binding.

  • b Numbers indicate the position of the first nucleotide of the predicted MacR binding site relative to the start codon for the gene.