TABLE 4

Summary of Shigella WGS validation sets used in this studya

Strain designation (molecular)No. of strainsNo. of serotypes includedPrediction accuracy, no. of strains (%)
80% length coverage50% length coverage
SpeciesSerotypeSpeciesSerotype
S. boydii901979 (87.7)76 (84.4)87 (96.7)87 (96.7)
S. dysenteriae741372 (97.3)72 (97.3)74 (100)74 (100)
S. flexneri871587 (100)82 (88.9)87 (100)84 (96.6)
S. sonnei93192 (98.9)92 (98.9)92 (98.9)92 (98.9)
Shigella subtotal34449330 (95.9)322 (93.6)340 (98.8)337 (98.0)
EIEC1414 (100)14 (100)
Non-Shigella/EIEC2222 (100)22 (100)
Overall380366 (96.3)373 (98.2)
  • a Strains were sequenced from an in-house collection of 62 clinical isolates and 33 reference strains (n = 95), or their WGSs were downloaded from the NCBI (n = 255).