TABLE 3

Number of genes associated with general COG functional categories in the T. gabretensis S55T genome

COG categoryCodeNo. of genes% of total genes
Amino acid transport and metabolismE2246.6
Carbohydrate transport and metabolismG2276.7
Cell cycle control, cell division, and chromosome partitioningD290.9
Cell motilityN541.6
Cell wall/membrane/envelope biogenesisM1935.7
Coenzyme transport and metabolismH1414.2
CytoskeletonZ10.03
Defense mechanismsV1444.2
Energy production and conversionC1434.2
Extracellular structuresW140.4
Function unknownS1354.0
General function prediction onlyR3179.4
Inorganic ion transport and metabolismP912.7
Intracellular trafficking, secretion, and vesicular transportU581.7
Lipid transport and metabolismI1163.4
Mobilome: prophages and transposonsX190.6
Nucleotide transport and metabolismF742.2
Posttranslational modification, protein turnover, and chaperonesO1073.2
Replication, recombination, and repairL802.4
Secondary metabolite biosynthesis, transport, and catabolismQ802.4
Signal transduction mechanismsT1253.7
TranscriptionK2116.2
Translation, ribosomal structure, and biogenesisJ1755.2
Not in COGs63218.6