TABLE 1

Identity and source of new Salmonella Typhimurium genomes investigated in this study

Strain nameRegion in the UKHost speciesSample typeDate of isolation (day/mo/yr)DTPFGE E. coli protocolPFGE Salmonella protocolMLSTReference(s) for information/genomes
PM1402/06CheshireGreenfinchPostmortem liverNovember 200640611912; this study
XT1456/06GwentGoldfinchPostmortem liverDecember 200681556812; this study
PM108/01PowysGreenfinchPostmortem spleenFebruary 200156v5556812; this study
PM1422/05GlamorganGreenfinchPostmortem liverDecember 200556v8956812; this study
PM65/01LancashireHouse sparrowPostmortem kidneyJanuary 200140611912; this study
PM132/06LeicestershireGreenfinchPostmortem liverFebruary 200656v5556812; this study
XT062/01CheshireGreenfinchPostmortem liverJanuary 200187v51912; this study
PM1377/06KentHouse sparrowPostmortem small intestineNovember 200656v5556812; this study
PM100/01ShropshireGreenfinchPostmortem spleenFebruary 200140611912; this study
PM54/01NottinghamshireHouse sparrowPostmortem cropJanuary 200156v5556812; this study
PM1356/06DevonHouse sparrowPostmortem liverNovember 200640611912; this study
H144540642West MidlandsHumanFeces05/11/201456v568Public Health England
H143320447West MidlandsHumanFeces12/08/201456v568Public Health England
H143540876Sussex, Surrey, and KentDomestic cat27/08/201456v568Public Health England
H142780372Sussex, Surrey, and KentHumanFeces04/07/20144019Public Health England
H143120429West MidlandsHumanFeces29/07/201440568Public Health England