TABLE 2

Results showing differences between the passerine and PHE isolates in clade A and the reference S. Typhimurium genomes of the in silico PCR virulotyping analysis and confirmatory mapping for the Hughes et al. (20) and Skyberg et al. (38) primers and the fimbriae-associated primers

IsolatePresence of genea
sopEpefAfimAmsgAspvB
PM1402/0600110
XT1456/0600110
PM108/0100110
PM1422/0500110
PM65/0100110
PM132/0600110
XT062/0100110
PM1377/0600110
PM100/0100110
PM54/0100110
PM1356/0600110
H1427803721b0110
H14312042900110
H14332044700110
H14354087600110
H14454064200110
SO4698-0910110
A13001111
DT10401111
SL134411111
D23580011c11
DT20111c1
LT201111
  • a 0, absent; 1, present.

  • b Value has a cost of 2 (cost refers to a mismatch in the primer sites).

  • c Value has a cost of 1.