Table 1.

The 30 most abundant transcripts from P. carnosa during growth on wood relative to growth on YMPG

Gene IDaPredicted activityNo. of reads/no. of reads from YMPG
FirPineSpruceMapleAvg
45Manganese peroxidase5,7933,1694,3602,4023,931
31Manganese peroxidase3,3032,0621,1361,7342,059
383 + 781Manganese peroxidase1,4921,017202370770
23Serine-threonine rich765699600719696
970Phosphatidylethanolamine binding1,468331207290574
119Nonribosomal protein synthetase549407455416457
42Glyoxal oxidase657246360372409
9Lignin peroxidase2019264949326
1006Xylanase GH106990486228322
1168Manganese peroxidase653236108254313
1138Manganese peroxidase58818597182263
1039Cellulose binding GH614074411488247
1512Cellulose binding iron reductase228099050243
1428NADPH dehydrogenase284247171249238
314Aspartic peptidase416218119169230
9500Dioxygenase4953822343200
697Manganese peroxidase43110588119185
88O-Methyltransferase96119158278163
254Xylanase GH1031333119119151
2506Aminotransferase449113225129
361Cellobiohydrolase GH6213458958128
664Endoglucanase GH51033311640125
144Cellobiohydrolase GH74612185249123
732P450 monooxygenase98113167110122
2246Cellulose binding GH6112179170121121
6787Dioxygenase2742912433115
3683Unknown11512474128110
26Serine-threonine rich1697969124110
130S53 protease84124111118109
323Cellobiohydrolase GH7113246132107
  • a Reference data for each Gene ID are presented in Fig. S1 in the supplemental material.