Table 1

Sequences of primers and probe used in this study

AssayPrimer or probeSequenceReference(s)
Human Bacteroides PCRHF1835′-ATC ATG AGT TCA CAT GTC CG-3′8
Bac708R5′-CAA TCG GAG TTC TTC GTG-3′
M. smithii PCRMnif-342f5′-AAC AGA AAA CCC AGT GAA GAG-3′55
Mnif-363r5′-ACG TAA AGG CAC TGA AAA ACC-3′
Adenovirus nested PCRhexAA18855′-GCC GCA GTG GTC TTA CAT GCA CAT C-3′46
hexAA19135′-CAG CAC GCC GCG GAT GTC AAA GT-3′
nehexAA18935′-GCC ACC GAG ACG TAC TTC AGC CTG-3′
nehexAA19055′-TTG TAC GAG TAC GCG GTA TCC TCG CGG TC-3′
Human polyomavirus PCR/qPCRaSM25′-AGT CTT TAG GGT CTT CTA CCT TT-3′37, 38
P65′-GGT GCC AAC CTA TGG AAC AG-3′
KGJ35′-(FAM)-TCA TCA CTG GCA AAC AT-(MGBNFQ)-3′
  • a The SM2 and P6 primers were used in both the PCR and qPCR assays.