Table 1

Annotation of plasmid pTP1

ORFPosition (strand)Start/stop codonLength (aa)Function/featureHomologue (GenBank accession no.)Identity (%); E value
15…178 (−)CTG/TGA58RC-Rep fragmentThermococcus nautilus plasmid pTN1, Rep74 (YP_001351689)15/37 (41%); 3e−03
2 (repTP1)158…1975 (+)ATG/TAA606RC-RepThermococcus nautilus plasmid pTN1, Rep74 (YP_001351689)172/488 (35%); 4e−81
31896…2468 (−)ATG/TAA191RC-Rep fragmentThermococcus nautilus plasmid pTN1, Rep74 (YP_001351689)64/179 (36%); 5e−22
42646…3008 (−)GTG/TAG121TMDa (2�)
52977…3090 (−)GTG/TAA38TMD (1�)
  • a TMD, transmembrane domain. The numbers in parentheses denote the number of predicted TMDs.