Table 3

Highly discriminant bacterial patterns exclusive to 8604-fed mice

GenotypeBacterial patternSamplesaClassification (phylum; class; order; family)
ERβ+/+Uncultured bacterium A1912Firmicutes; Clostridia; Clostridiales; Lachnospiraceae
Uncultured rumen bacterium BRC1598Firmicutes; Clostridia; Clostridiales; Lachnospiraceae
Uncultured rumen bacterium 3C3d-177Firmicutes; Clostridia; Clostridiales; Lachnospiraceae
Uncultured bacterium A116Firmicutes; Clostridia; Clostridiales; Lachnospiraceae
Uncultured bacterium TuCc266Firmicutes; Clostridia; Clostridiales; Lachnospiraceae
ERβ−/−Lactobacillus fermentum KLB 26112Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae
Uncultured Bacilli bacterium ATB-LH-634912Firmicutes; Bacilli; Lactobacillales; Leuconostocaceae
Uncultured bacterium TTMF5712Unclassified bacteria
Uncultured bacterium SJTUF014311Firmicutes; Clostridia; Clostridiales
Uncultured bacterium CI35cm.2.05a10Chloroflexi; Anaerolineae; Anaerolineales; Anaerolineaceae
Uncultured bacterium L-121(3)10Firmicutes; Clostridia; Clostridiales; Lachnospiraceae
Uncultured rumen bacterium BRC1110Firmicutes; Clostridia; Clostridiales
Ruminofilibacter xylanolyticum S19Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiaceae
Uncultured rumen bacterium F24-F069Bacteroidetes; Bacteroidia; Bacteroidales
Uncultured rumen bacterium 3C3d-178Firmicutes; Clostridia; Clostridiales; Lachnospiraceae
Cellulophaga tyrosinoxydans EM417Bacteroidetes; Flavobacteria; Flavobacteriales; Flavobacteriaceae
Desulfovibrio vulgaris I56Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae
Uncultured bacterium BacB0386Firmicutes; Clostridia; Clostridiales; Clostridiaceae
Uncultured bacterium IIB-276Bacteroidetes; Bacteroidia; Bacteroidales
Uncultured bacterium L-1546Firmicutes; Clostridia; Clostridiales; Lachnospiraceae
Uncultured bacterium SJTUD01506Firmicutes; Clostridia; Clostridiales
Uncultured bacterium Y046Aquificae; Aquificae; Aquificales; Aquificaceae
Uncultured Bacteroidetes bacterium VHS-B5-156Bacteroidetes
Uncultured Shuttleworthia sp. 301E01 (oral)6Firmicutes; Clostridia; Clostridiales; Lachnospiraceae
  • a Number of samples in which the species pattern was found among the n = 21 samples tested.