TABLE 4

Large dynamic regions in XCPsa

Strain LDR% GC contentLDR size (kbp)Function, phenotype, or product(s) (no. of genes)
X. campestris pv. vitiswoodrowii LMG 954 W157.223.4Transposition (TniA [2]; TniB); virulence regulator; ATP-dependent DNA helicase UvrD/PcrA (2); hypothetical protein (21)
X. campestris pv. vitistrifoliae LMG 940 F154.612.5Phage-related protein (phage-related integrase; phage-related regulatory protein cII); succinoglycan biosynthesis protein; hypothetical protein (9)
P. cissicola LMG 21719 J160.280Restriction-modification system (modification methylase [2]; endonuclease; cytosine-specific DNA methyltransferase); secretion system protein (3); tRNA (tRNA-Gly-GCC [2]); PFGI-1-like cluster (8); integrase regulator R; integrase (4); sensor kinase (diguanylate cyclase/phosphodiesterase with PAS/PAC sensor[s]; sensor kinase); phage protein; mobile element protein (4); transposon-related functions; TraU protein (2); hypothetical protein (53)
P. cissicola LMG 21719 J258.416.7DNA repair protein RadC; YciE; VirB1; DNA helicase-related protein; DNA topoisomerase I; mycofactocin radical SAM maturase; genomic island nu Sa beta2; hypothetical protein (11)
X. axonopodis pv. melhusii LMG 9050 H152.937Cyclic beta-1,2-glucan synthase; 4-carboxymuconolactone decarboxylase; d-alanine-d-alanine ligase (2); dehydrogenases with different specificities; O-succinyl benzoic acid-CoA ligase; MchC, MchD protein; adenosylmethionine-8-amino-7-oxononanoate aminotransferase; 3-oxoacyl-[acyl-carrier-protein] synthase, KASII; colicin V secretion ABC transporter ATP-binding protein; HlyD family secretion protein; transposase and inactivated derivatives; superfamily I DNA and RNA helicases; phage integrase; transposon-related functions (2); mobile element protein (5); hypothetical protein (46)
X. axonopodis pv. melhusii LMG 9050 H257.728.3Kinesin-related protein K4; anaerobic dimethyl sulfoxide reductase chain A; ATP-dependent DNA helicase UvrD/PcrA; type III restriction-modification system methylation subunit; chaperone protein DnaJ; DNA repair protein RadC; mycobacteriophage Barnyard protein gp56; RepB/MobA-like protein; MobA/MobL protein; mobile element protein (2); hypothetical protein (18)
X. campestris pv. durantae LMG 69661.027Core genes for TIVSS (virB1, virB3, virB4, virB5, virB6, virB8, virB9, virB10, and virB11); parA; trwC; trwB; kfrA; cell filamentation protein Fic; hypothetical protein (13)
X. citri pv. citri LMG 9322 C138.0~17Flagellum biosynthesis proteins (FliM, FlgK); DNA replication and repair protein (4); two-component system histidine kinase DccS; methyl-accepting chemotaxis protein TlpB; disulfide interchange protein Dsb; ABC transporters for amino acid, zinc, and long-chain fatty acid; proteins involved in biosynthesis of fatty acid (enoyl-[acyl-carrier-protein] reductase [FMN]); leucine (3-isopropylmalate dehydratase); cofactor (ubiquinone/menaquinone biosynthesis methyltransferase UbiE); thymidylate (ThyX); electron transfer agents (2); hypothetical protein (12)
X. citri pv. citri LMG 9322 C254.715.5TPR domain protein; sensory box histidine kinase/response regulator; general stress protein; hypothetical protein (8)
X. axonopodis pv. cajani LMG 558 A158.622Restriction-modification system (2); phage integrase; hypothetical protein (16)
X. axonopodis pv. cajani LMG 558 A256.718.6Restriction-modification system (3); AAA_5 ATPase associated with various cellular activities; succinoglycan biosynthesis protein; phage integrase; hypothetical protein (13)
X. axonopodis pv. clitoriae LMG 9045 L149.515.4Type II restriction enzyme, methylase subunit YeeA; transcriptional regulator; bipolar DNA helicase HerA; phage integrase; virulence regulator; plasmid mobilization protein; hypothetical protein (12)
X. campestris pv. mangiferaeindicae LMG 941 M164.295.9NRPS-PKS cluster
X. citri pv. glycines LMG 712 G159.412.5Chitinase; transcriptional regulator lacI family; sensory box/GGDEF family protein; mobile element protein (3); hypothetical protein (8)
  • a CoA, coenzyme A; LDR, large dynamic region; SAM, S-adenosylmethionine; TIVSS, type IV secretion system.