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Applied and Environmental Microbiology
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Computational Biology

  • Biotechnology
    In Silico Identification of Gene Amplification Targets for Improvement of Lycopene Production
    Hyung Seok Choi, Sang Yup Lee, Tae Yong Kim, Han Min Woo
  • Methods
    Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
    Patrick D. Schloss, Sarah L. Westcott, Thomas Ryabin, Justine R. Hall, Martin Hartmann, Emily B. Hollister, Ryan A. Lesniewski, Brian B. Oakley, Donovan H. Parks, Courtney J. Robinson, Jason W. Sahl, Blaz Stres, Gerhard G. Thallinger, David J. Van Horn, Carolyn F. Weber
  • Environmental Microbiology
    Assessment of Microbial Communities by Graph Partitioning in a Study of Soil Fungi in Two Alpine Meadows
    L. Zinger, E. Coissac, P. Choler, R. A. Geremia
  • Microbial Ecology
    Defining DNA-Based Operational Taxonomic Units for Microbial-Eukaryote Ecology
    David A. Caron, Peter D. Countway, Pratik Savai, Rebecca J. Gast, Astrid Schnetzer, Stefanie D. Moorthi, Mark R. Dennett, Dawn M. Moran, Adriane C. Jones
  • Genetics and Molecular Biology
    Identification of a Novel Two-Peptide Lantibiotic, Lichenicidin, following Rational Genome Mining for LanM Proteins
    Máire Begley, Paul D. Cotter, Colin Hill, R. Paul Ross
  • Evolutionary and Genomic Microbiology
    Genome-Derived Criteria for Assigning Environmental narG and nosZ Sequences to Operational Taxonomic Units of Nitrate Reducers
    Katharina Palmer, Harold L. Drake, Marcus A. Horn
  • PHYSIOLOGY AND BIOTECHNOLOGY
    Bioinformatic and Expression Analyses of Genes Mediating Zinc Homeostasis in Nostoc punctiforme
    Lee Hudek, L. C. Rai, David Freestone, Agnes Michalczyk, Maria Gibson, Y. F. Song, M. Leigh Ackland
  • PHYSIOLOGY AND BIOTECHNOLOGY
    In Silico Geobacter sulfurreducens Metabolism and Its Representation in Reactive Transport Models
    E. L. King, K. Tuncay, P. Ortoleva, C. Meile
  • Methods
    TRiFLe, a Program for In Silico Terminal Restriction Fragment Length Polymorphism Analysis with User-Defined Sequence Sets
    Pilar Junier, Thomas Junier, Karl-Paul Witzel
  • Evolutionary and Genomic Microbiology
    Metagenomics: Read Length Matters
    K. Eric Wommack, Jaysheel Bhavsar, Jacques Ravel

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Print ISSN: 0099-2240; Online ISSN: 1098-5336