RNA, Ribosomal

Open Access

Microbial Ecology
Simulated rRNA/DNA Ratios Show Potential To Misclassify Active Populations as Dormant
Blaire Steven, Cedar Hesse, John Soghigian, La Verne Gallegos-Graves, John Dunbar
Methods
Double Labeling of Oligonucleotide Probes for Fluorescence In Situ Hybridization (DOPE-FISH) Improves Signal Intensity and Increases rRNA Accessibility
Kilian Stoecker, Christiane Dorninger, Holger Daims, Michael Wagner
Methods
Molecular Detection of Viable Bacterial Pathogens in Water by Ratiometric Pre-rRNA Analysis
Gerard A. Cangelosi, Kris M. Weigel, Clarita Lefthand-Begay, John S. Meschke
Microbial Ecology
Establishment of an Analytical System for the Human Fecal Microbiota, Based on Reverse Transcription-Quantitative PCR Targeting of Multicopy rRNA Molecules
Kazunori Matsuda, Hirokazu Tsuji, Takashi Asahara, Kazumasa Matsumoto, Toshihiko Takada, Koji Nomoto
Methods
Resolving Genetic Functions within Microbial Populations: In Situ Analyses Using rRNA and mRNA Stable Isotope Probing Coupled with Single-Cell Raman-Fluorescence In Situ Hybridization
Wei E. Huang, Andrew Ferguson, Andrew C. Singer, Kathryn Lawson, Ian P. Thompson, Robert M. Kalin, Michael J. Larkin, Mark J. Bailey, Andrew S. Whiteley
Microbial Ecology
Molecular Characterization of the Diversity and Distribution of a Thermal Spring Microbial Community by Using rRNA and Metabolic Genes
Justine R. Hall, Kendra R. Mitchell, Olan Jackson-Weaver, Ara S. Kooser, Brandi R. Cron, Laura J. Crossey, Cristina D. Takacs-Vesbach
Microbial Ecology
Quantifying Microbial Utilization of Petroleum Hydrocarbons in Salt Marsh Sediments by Using the ¹³C Content of Bacterial rRNA
Ann Pearson, Kimberly S. Kraunz, Alex L. Sessions, Anne E. Dekas, William D. Leavitt, Katrina J. Edwards
Microbial Ecology
Metagenomic and Small-Subunit rRNA Analyses Reveal the Genetic Diversity of Bacteria, Archaea, Fungi, and Viruses in Soil
Noah Fierer, Mya Breitbart, James Nulton, Peter Salamon, Catherine Lozupone, Ryan Jones, Michael Robeson, Robert A. Edwards, Ben Felts, Steve Rayhawk, Rob Knight, Forest Rohwer, Robert B. Jackson
Methods
Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
Qiong Wang, George M. Garrity, James M. Tiedje, James R. Cole
Microbial Ecology
Comparison of rRNA and Polar-Lipid-Derived Fatty Acid Biomarkers for Assessment of ¹³C-Substrate Incorporation by Microorganisms in Marine Sediments
Barbara J. MacGregor, Henricus T. S. Boschker, Rudolf Amann

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