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Applied and Environmental Microbiology
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RNA, Ribosomal

  • Open Access
    Microbial Ecology
    Simulated rRNA/DNA Ratios Show Potential To Misclassify Active Populations as Dormant
    Blaire Steven, Cedar Hesse, John Soghigian, La Verne Gallegos-Graves, John Dunbar
  • Methods
    Double Labeling of Oligonucleotide Probes for Fluorescence In Situ Hybridization (DOPE-FISH) Improves Signal Intensity and Increases rRNA Accessibility
    Kilian Stoecker, Christiane Dorninger, Holger Daims, Michael Wagner
  • Methods
    Molecular Detection of Viable Bacterial Pathogens in Water by Ratiometric Pre-rRNA Analysis
    Gerard A. Cangelosi, Kris M. Weigel, Clarita Lefthand-Begay, John S. Meschke
  • Microbial Ecology
    Establishment of an Analytical System for the Human Fecal Microbiota, Based on Reverse Transcription-Quantitative PCR Targeting of Multicopy rRNA Molecules
    Kazunori Matsuda, Hirokazu Tsuji, Takashi Asahara, Kazumasa Matsumoto, Toshihiko Takada, Koji Nomoto
  • Methods
    Resolving Genetic Functions within Microbial Populations: In Situ Analyses Using rRNA and mRNA Stable Isotope Probing Coupled with Single-Cell Raman-Fluorescence In Situ Hybridization
    Wei E. Huang, Andrew Ferguson, Andrew C. Singer, Kathryn Lawson, Ian P. Thompson, Robert M. Kalin, Michael J. Larkin, Mark J. Bailey, Andrew S. Whiteley
  • Microbial Ecology
    Molecular Characterization of the Diversity and Distribution of a Thermal Spring Microbial Community by Using rRNA and Metabolic Genes
    Justine R. Hall, Kendra R. Mitchell, Olan Jackson-Weaver, Ara S. Kooser, Brandi R. Cron, Laura J. Crossey, Cristina D. Takacs-Vesbach
  • Microbial Ecology
    Quantifying Microbial Utilization of Petroleum Hydrocarbons in Salt Marsh Sediments by Using the 13C Content of Bacterial rRNA
    Ann Pearson, Kimberly S. Kraunz, Alex L. Sessions, Anne E. Dekas, William D. Leavitt, Katrina J. Edwards
  • Microbial Ecology
    Metagenomic and Small-Subunit rRNA Analyses Reveal the Genetic Diversity of Bacteria, Archaea, Fungi, and Viruses in Soil
    Noah Fierer, Mya Breitbart, James Nulton, Peter Salamon, Catherine Lozupone, Ryan Jones, Michael Robeson, Robert A. Edwards, Ben Felts, Steve Rayhawk, Rob Knight, Forest Rohwer, Robert B. Jackson
  • Methods
    Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
    Qiong Wang, George M. Garrity, James M. Tiedje, James R. Cole
  • Microbial Ecology
    Comparison of rRNA and Polar-Lipid-Derived Fatty Acid Biomarkers for Assessment of 13C-Substrate Incorporation by Microorganisms in Marine Sediments
    Barbara J. MacGregor, Henricus T. S. Boschker, Rudolf Amann

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