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Applied and Environmental Microbiology
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SNP

  • Genome-Wide Identification of Host-Segregating Single-Nucleotide Polymorphisms for Source Attribution of Clinical <span class="named-content genus-species" id="named-content-1">Campylobacter coli</span> Isolates
    Environmental Microbiology
    Genome-Wide Identification of Host-Segregating Single-Nucleotide Polymorphisms for Source Attribution of Clinical Campylobacter coli Isolates

    Genome-wide and source attribution studies based on Campylobacter species have shown their importance for the understanding of foodborne infections. Although the use of multilocus sequence typing based on 7 genes from C. jejuni is a powerful method to structure populations, when applied to C. coli...

    Quentin Jehanne, Ben Pascoe, Lucie Bénéjat, Astrid Ducournau, Alice Buissonnière, Evangelos Mourkas, Francis Mégraud, Emilie Bessède, Samuel K. Sheppard, Philippe Lehours
  • Implications of Mobile Genetic Elements for <em>Salmonella enterica</em> Single-Nucleotide Polymorphism Subtyping and Source Tracking Investigations
    Food Microbiology
    Implications of Mobile Genetic Elements for Salmonella enterica Single-Nucleotide Polymorphism Subtyping and Source Tracking Investigations

    Despite increasingly routine use of WGS and SNP subtyping in outbreak and source tracking investigations, whether and how MGEs affect SNP subtyping has not been thoroughly investigated. Besides chromosomal MGEs, plasmids are frequently entangled in draft genome assemblies and yet to be assessed for their impact on SNP subtyping. This study provides evidence-based guidance on the treatment of MGEs in SNP analysis for Salmonella...

    Shaoting Li, Shaokang Zhang, Leen Baert, Balamurugan Jagadeesan, Catherine Ngom-Bru, Taylor Griswold, Lee S. Katz, Heather A. Carleton, Xiangyu Deng
  • Molecular Epidemiology of <em>Xanthomonas perforans</em> Outbreaks in Tomato Plants from Transplant to Field as Determined by Single-Nucleotide Polymorphism Analysis
    Plant Microbiology
    Molecular Epidemiology of Xanthomonas perforans Outbreaks in Tomato Plants from Transplant to Field as Determined by Single-Nucleotide Polymorphism Analysis

    Current management of Xanthomonas perforans on tomato plants mainly relies on the frequent application of pesticides. However, the lack of effective pesticides and the development of strain tolerance to certain bactericides limit the ability to control outbreaks in production fields. Better knowledge of probable sources of...

    Peter Abrahamian, Sujan Timilsina, Gerald V. Minsavage, Neha Potnis, Jeffrey B. Jones, Erica M. Goss, Gary E. Vallad
  • A Q Fever Outbreak with a High Rate of Abortions at a Dairy Goat Farm: <span class="named-content genus-species" id="named-content-1">Coxiella burnetii</span> Shedding, Environmental Contamination, and Viability
    Public and Environmental Health Microbiology
    A Q Fever Outbreak with a High Rate of Abortions at a Dairy Goat Farm: Coxiella burnetii Shedding, Environmental Contamination, and Viability

    This work describes a 7-month follow-up of the excretion by different routes of Coxiella burnetii genotype SNP1/MST13 in a herd of goats that suffered high rate of abortions (81%), generating high environmental contamination. Some of the workers and visitors who accessed the farm were infected, with fever as the main symptom but a low incidence of pneumonia. The...

    Raquel Álvarez-Alonso, Mikel Basterretxea, Jesús F. Barandika, Ana Hurtado, Jasone Idiazabal, Isabel Jado, Xabier Beraza, Milagros Montes, Paloma Liendo, Ana L. García-Pérez
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