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soil

  • <span class="named-content genus-species" id="named-content-1">Blastomyces dermatitidis</span> Environmental Prevalence in Minnesota: Analysis and Modeling Using Soil Collected at Basal and Outbreak Sites
    Microbial Ecology
    Blastomyces dermatitidis Environmental Prevalence in Minnesota: Analysis and Modeling Using Soil Collected at Basal and Outbreak Sites

    Upon inhalation of spores from the fungus Blastomyces dermatitidis from the environment, humans and animals can develop the disease blastomycosis. Based on disease epidemiology, B. dermatitidis is known to be endemic in the United States and Canada around the Great Lakes and in the Ohio and...

    Katrina M. Jackson, Keith C. Pelletier, Joni Scheftel, Joshua D. Kerkaert, Serina L. Robinson, Tami McDonald, Jeff B. Bender, Joseph F. Knight, Malia Ireland, Kirsten Nielsen
  • Organohalide-Respiring Bacteria at the Heart of Anaerobic Metabolism in Arctic Wet Tundra Soils
    Microbial Ecology
    Organohalide-Respiring Bacteria at the Heart of Anaerobic Metabolism in Arctic Wet Tundra Soils

    Once considered relevant only in contaminated sites, it is now recognized that biological chlorine cycling is widespread in natural environments. However, linkages between chlorine cycling and other ecosystem processes are not well established.

    David A. Lipson, Theodore K. Raab, Sherlynette Pérez Castro, Alexander Powell
  • Horizontal Spread of <span class="named-content genus-species" id="named-content-1">Rhodococcus equi</span> Macrolide Resistance Plasmid pRErm46 across Environmental <em>Actinobacteria</em>
    Environmental Microbiology
    Horizontal Spread of Rhodococcus equi Macrolide Resistance Plasmid pRErm46 across Environmental Actinobacteria

    This study demonstrates the efficient horizontal transfer of the Rhodococcus equi conjugative plasmid pRErm46, recently identified as the cause of the emerging macrolide resistance among equine isolates of this pathogen, to and from different environmental Actinobacteria, including a variety of rhodococci as well as Nocardia and Arthrobacter...

    Sonsiray Álvarez-Narváez, Steeve Giguère, Londa J. Berghaus, Cody Dailey, José A. Vázquez-Boland
  • Open Access
    The ZKIR Assay, a Real-Time PCR Method for the Detection of <em>Klebsiella pneumoniae</em> and Closely Related Species in Environmental Samples
    Methods | Spotlight
    The ZKIR Assay, a Real-Time PCR Method for the Detection of Klebsiella pneumoniae and Closely Related Species in Environmental Samples

    The Klebsiella pneumoniae species complex Kp includes human and animal pathogens, some of which are emerging as hypervirulent and/or antibiotic-resistant strains. These pathogens are diverse and classified into seven phylogroups, which may differ in their reservoirs and epidemiology. Proper management of this public health hazard requires a better understanding of Kp...

    Elodie Barbier, Carla Rodrigues, Geraldine Depret, Virginie Passet, Laurent Gal, Pascal Piveteau, Sylvain Brisse
  • Core Rhizosphere Microbiomes of Dryland Wheat Are Influenced by Location and Land Use History
    Microbial Ecology
    Core Rhizosphere Microbiomes of Dryland Wheat Are Influenced by Location and Land Use History

    Plant-associated microbiomes are critical for plant health and other important agroecosystem processes. We assessed the bacterial and fungal microbiomes of wheat grown in soils from across a dryland wheat cropping systems in eastern Washington to identify the core microbiome on wheat roots that is consistent across soils from different locations and land use histories. Moreover, cross-domain co-occurrence network analysis identified...

    Daniel C. Schlatter, Chuntao Yin, Scot Hulbert, Timothy C. Paulitz
  • Open Access
    Soil Aggregate Microbial Communities: Towards Understanding Microbiome Interactions at Biologically Relevant Scales
    Minireview
    Soil Aggregate Microbial Communities: Towards Understanding Microbiome Interactions at Biologically Relevant Scales

    Soils contain a tangle of minerals, water, nutrients, gases, plant roots, decaying organic matter, and microorganisms which work together to cycle nutrients and support terrestrial plant growth. Most soil microorganisms live in periodically interconnected communities closely associated with soil aggregates, i.e., small (<2 mm), strongly bound clusters of minerals and organic carbon that persist through mechanical disruptions and...

    Regina L. Wilpiszeski, Jayde A. Aufrecht, Scott T. Retterer, Matthew B. Sullivan, David E. Graham, Eric M. Pierce, Olivier D. Zablocki, Anthony V. Palumbo, Dwayne A. Elias
  • <em>Salmonella enterica</em> in Soils Amended with Heat-Treated Poultry Pellets Survived Longer than Bacteria in Unamended Soils and More Readily Transferred to and Persisted on Spinach
    Food Microbiology
    Salmonella enterica in Soils Amended with Heat-Treated Poultry Pellets Survived Longer than Bacteria in Unamended Soils and More Readily Transferred to and Persisted on Spinach

    Heat-treated poultry pellets (HTPP) often are used by fruit and vegetable growers as a slow-release fertilizer. However, contamination of soil on farms may occur through contaminated irrigation water or scat from wild animals. Here, we show that the presence of HTPP in soil led to increased S. Newport survival in soil and to greater likelihood of its transfer to and...

    Manoj K. Shah, Rhodel Bradshaw, Esmond Nyarko, Eric T. Handy, Cheryl East, Patricia D. Millner, Teresa M. Bergholz, Manan Sharma
  • Molecular Hydrogen, a Neglected Key Driver of Soil Biogeochemical Processes
    Minireview
    Molecular Hydrogen, a Neglected Key Driver of Soil Biogeochemical Processes

    The atmosphere of the early Earth is hypothesized to have been rich in reducing gases such as hydrogen (H2). H2 has been proposed as the first electron donor leading to ATP synthesis due to its ubiquity throughout the biosphere as well as its ability to easily diffuse through microbial cells and its low activation energy requirement.

    Sarah Piché-Choquette, Philippe Constant
  • Open Access
    Bacterial Dispersers along Preferential Flow Paths of a Clay Till Depth Profile
    Microbial Ecology
    Bacterial Dispersers along Preferential Flow Paths of a Clay Till Depth Profile

    The ability to disperse is considered essential for soil bacteria colonization and survival, yet very little is known about the dispersal ability of communities from different heterogeneous soil compartments. Important factors for dispersal are the thickness and connectivity of the liquid film between soil particles. The present results from a fractured clay till depth profile suggest that dispersal ability is common in various soil...

    U. S. Krüger, A. Dechesne, F. Bak, N. Badawi, O. Nybroe, J. Aamand
  • Open Access
    Survival of <em>Escherichia coli</em> in Manure-Amended Soils Is Affected by Spatiotemporal, Agricultural, and Weather Factors in the Mid-Atlantic United States
    Public and Environmental Health Microbiology | Spotlight
    Survival of Escherichia coli in Manure-Amended Soils Is Affected by Spatiotemporal, Agricultural, and Weather Factors in the Mid-Atlantic United States

    Current language in the Food Safety Modernization Act Produce Safety Rule states no objection to a 90- or 120-day interval between application of untreated BSAAO and harvest of crops to minimize transfer of pathogens to produce intended for human consumption with the intent to limit potential cases of foodborne illness. This regional multiple season, multiple location field trial determined survival durations of...

    Manan Sharma, Patricia D. Millner, Fawzy Hashem, Bryan T. Vinyard, Cheryl L. East, Eric T. Handy, Kathryn White, Richard Stonebraker, Corrie P. Cotton

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