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Applied and Environmental Microbiology
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Latest Articles

  • A <em>Pseudoalteromonas</em> Clade with Remarkable Biosynthetic Potential
    Genetics and Molecular Biology
    A Pseudoalteromonas Clade with Remarkable Biosynthetic Potential

    This study demonstrates that the Pseudoalteromonas strain HM-SA03, isolated from the venomous blue-ringed octopus, Hapalochalaena sp., is a biosynthetically talented organism, capable of producing alterochromides and potentially six other specialized metabolites. We identified a pseudoalterobactin biosynthesis gene cluster and proposed a pathway for the production of the associated siderophore.

    Rocky Chau, Leanne A. Pearson, Jesse Cain, John A. Kalaitzis, Brett A. Neilan
  • <em>Salmonella</em> Genomics and Population Analyses Reveal High Inter- and Intraserovar Diversity in Freshwater
    Microbial Ecology
    Salmonella Genomics and Population Analyses Reveal High Inter- and Intraserovar Diversity in Freshwater

    Salmonella is a leading cause of bacterial foodborne illness in the United States, and outbreaks linked to fresh produce are increasing. Understanding Salmonella ecology in freshwater is of importance, especially where irrigation practices or recreational use occur.

    Abigail M. Deaven, Christina M. Ferreira, Elizabeth A. Reed, Jeremy R. Chen See, Nora A. Lee, Eduardo Almaraz, Paula C. Rios, Jacob G. Marogi, Regina Lamendella, Jie Zheng, Rebecca L. Bell, Nikki W. Shariat
  • The Reliability of Metagenome-Assembled Genomes (MAGs) in Representing Natural Populations: Insights from Comparing MAGs against Isolate Genomes Derived from the Same Fecal Sample
    Microbial Ecology
    The Reliability of Metagenome-Assembled Genomes (MAGs) in Representing Natural Populations: Insights from Comparing MAGs against Isolate Genomes Derived from the Same Fecal Sample

    Metagenome assembly and the recovery of metagenome-assembled genomes (MAGs) have recently become common tasks for microbiome studies across environmental and clinical settings. However, the extent to which MAGs can capture the genes of the population they represent remains speculative.

    Alexandra Meziti, Luis M. Rodriguez-R, Janet K. Hatt, Angela Peña-Gonzalez, Karen Levy, Konstantinos T. Konstantinidis
  • Changes in Bacterial and Chemical Components and Growth Prediction for <span class="named-content genus-species" id="named-content-1">Lactobacillus sakei</span> during Kimoto-Style Fermentation Starter Preparation in Sake Brewing: a Comprehensive Analysis
    Food Microbiology
    Changes in Bacterial and Chemical Components and Growth Prediction for Lactobacillus sakei during Kimoto-Style Fermentation Starter Preparation in Sake Brewing: a Comprehensive Analysis

    It is important to produce lactic acid in kimoto-style seed mash; however, the bacterial transition is different depending on the sake brewery. The reason why there are diverse bacterial transitions during kimoto-style seed mash preparation for each sake brewery is unclear so far, and it causes difficulty in starting kimoto-style seed mash.

    Masayuki Takahashi, Kana Morikawa, Yasuko Kita, Takamasa Shimoda, Takeshi Akao, Nami Goto-Yamamoto
  • Essential Roles of Two FRQ Proteins (Frq1 and Frq2) in <span class="named-content genus-species" id="named-content-1">Beauveria bassiana</span>’s Virulence, Infection Cycle, and Calcofluor-Specific Signaling
    Invertebrate Microbiology
    Essential Roles of Two FRQ Proteins (Frq1 and Frq2) in Beauveria bassiana’s Virulence, Infection Cycle, and Calcofluor-Specific Signaling

    Opposite nuclear rhythms of two distinct FRQ proteins (Frq1 and Frq2) coexisting in an asexual fungal insect pathogen have been shown to orchestrate the fungal nonrhythmic conidiation in vitro in a circadian day independent of photoperiod change. This paper reports essential roles of both Frq1 and Frq2, but a greater role for Frq2, in sustaining the fungal virulence and infection cycle since either frq1 or frq2...

    Sen-Miao Tong, Ben-Jie Gao, Han Peng, Ming-Guang Feng
  • Open Access
    Colonization of Naive Roots from <em>Populus tremula</em> × <em>alba</em> Involves Successive Waves of Fungi and Bacteria with Different Trophic Abilities
    Plant Microbiology
    Colonization of Naive Roots from Populus tremula × alba Involves Successive Waves of Fungi and Bacteria with Different Trophic Abilities

    The tree root microbiome is composed of a very diverse set of bacterial and fungal communities. These microorganisms have a profound impact on tree growth, development, and protection against different types of stress.

    F. Fracchia, L. Mangeot-Peter, L. Jacquot, F. Martin, C. Veneault-Fourrey, A. Deveau
  • The Golgin Protein RUD3 Regulates <span class="named-content genus-species" id="named-content-1">Fusarium graminearum</span> Growth and Virulence
    Plant Microbiology
    The Golgin Protein RUD3 Regulates Fusarium graminearum Growth and Virulence

    Fusarium head blight (FHB) caused by the fungal pathogen Fusarium graminearum is an economically important disease of wheat and other small grain cereal crops worldwide, and limited effective control strategies are available. A better understanding of the regulation mechanisms of F. graminearum...

    Chenyu Wang, Yao Wang, Liyuan Zhang, Ziyi Yin, Yuancun Liang, Lei Chen, Shenshen Zou, Hansong Dong
  • Adjacent Terrestrial Landscapes Impact the Biogeographical Pattern of Soil <span class="named-content genus-species" id="named-content-1">Escherichia coli</span> Strains in Produce Fields by Modifying the Importance of Environmental Selection and Dispersal
    Microbial Ecology
    Adjacent Terrestrial Landscapes Impact the Biogeographical Pattern of Soil Escherichia coli Strains in Produce Fields by Modifying the Importance of Environmental Selection and Dispersal

    Understanding the ecology of enteric bacteria in extrahost environments is important for the development and implementation of strategies to minimize preharvest contamination of produce with enteric pathogens. Our findings suggest that watershed landscape is an important factor influencing the importance of ecological drivers and dispersal patterns of E. coli.

    ...
    Jingqiu Liao, Peter Bergholz, Martin Wiedmann
  • The Ethanologenic Bacterium <span class="named-content genus-species" id="named-content-1">Zymomonas mobilis</span> Divides Asymmetrically and Exhibits Heterogeneity in DNA Content
    Genetics and Molecular Biology
    The Ethanologenic Bacterium Zymomonas mobilis Divides Asymmetrically and Exhibits Heterogeneity in DNA Content

    With increasing environmental concerns about the exhausting use of fossil fuels, development of a sustainable biofuel production platform has been attracting significant public attention. Ethanologenic Z. mobilis species are endowed with an efficient ethanol fermentation capacity that surpasses, in several respects, that of baker’s yeast (...

    Katsuya Fuchino, Helena Chan, Ling Chin Hwang, Per Bruheim
  • Bacteria and Metabolic Potential in Karst Caves Revealed by Intensive Bacterial Cultivation and Genome Assembly
    Geomicrobiology
    Bacteria and Metabolic Potential in Karst Caves Revealed by Intensive Bacterial Cultivation and Genome Assembly

    Karst caves are oligotrophic environments that are dark and humid and have a relatively stable annual temperature. The diversity of bacteria and their metabolisms are crucial for understanding the biogeochemical cycling in cave ecosystems.

    Hai-Zhen Zhu, Zhi-Feng Zhang, Nan Zhou, Cheng-Ying Jiang, Bao-Jun Wang, Lei Cai, Hong-Mei Wang, Shuang-Jiang Liu

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